View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4153_low_10 (Length: 214)
Name: NF4153_low_10
Description: NF4153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4153_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 38841153 - 38841312
Alignment:
| Q |
37 |
aaatcaacaaatcactacctgcttatacttcttcaaacgacgtccatcaacaatctcaataacaaactccttcgaaaaaatattggtgagcttagcacca |
136 |
Q |
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| T |
38841153 |
aaatcaacaaatcactacctgcttatacttcttcaaacgacgtccatcaacaatctcaataacaaactccttcgaaaaaatattggtgagcttagcacca |
38841252 |
T |
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| Q |
137 |
taaccatttctcccaccagtagttttcttcacattataatcatagttaaggtgaccaaag |
196 |
Q |
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| T |
38841253 |
taaccatttctcccaccagtagttttcttcacattataatcatagttaaggtgaccaaag |
38841312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 173
Target Start/End: Original strand, 9877231 - 9877358
Alignment:
| Q |
46 |
aatcactacctgcttatacttcttcaaacgacgtccatcaacaatctcaataacaaactccttcgaaaaaatattggtgagcttagcaccataaccattt |
145 |
Q |
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||||||||||||||||||||||||||| | ||||||||| || | |||||||||||||| |||| |||||||| |||||||||||||||||||| ||| |
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| T |
9877231 |
aatcactacctgcttatacttcttcaacctccgtccatcagcagtttcaataacaaactcagtcgagaaaatattcgtgagcttagcaccataaccgttt |
9877330 |
T |
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| Q |
146 |
ctcccaccagtagttttcttcacattat |
173 |
Q |
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| T |
9877331 |
cttccaccagtagttttcttcacattat |
9877358 |
T |
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