View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4153_low_3 (Length: 355)
Name: NF4153_low_3
Description: NF4153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4153_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 36354177 - 36353840
Alignment:
| Q |
1 |
ctttgtgttagcattttcatggtacataaactatgagtacgtgtacgaggacaagtttattcaggtgaagattttgttgtcccttgtgccactattattg |
100 |
Q |
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| T |
36354177 |
ctttgtgttagcattttcatggtacataaactatgagtacgtgtacgaggacaagtttattcaggtgaagattttgttgtcccttgtgccactattattg |
36354078 |
T |
|
| Q |
101 |
ttgcttgttgttcattgtctctcaagtggagaatcgttcactttacctttgccagaggagagtgaatctttgcatagagctggtggatctccatggggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36354077 |
ttgcttgttgttcattgtctctcaagtggagaatcgttcactttacctttgccagaggagagtgaatctttgcatagagctggtggatctccatggggag |
36353978 |
T |
|
| Q |
201 |
tggcactcttgcttgtgttcctcttgtctatgatttcttatcagtcttcttttcatgaacgttggtttcctttcgctacaagatgaagatctaattctca |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36353977 |
tggcactcttgcttgtgttcctcttgtttatgatttcttatcagtcttcttttcatgaacgttggtttcctttcgctacaagatgaagatctcattctca |
36353878 |
T |
|
| Q |
301 |
actagttggcatctatatagaatcgacacttcagattg |
338 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
36353877 |
actagttggtatctatatagaatcgacacttcagattg |
36353840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 36355459 - 36355191
Alignment:
| Q |
5 |
gtgttagcattttcatggtacataaactatgagtacgtgtacgaggacaagtttattcaggtgaagattttgttgtcccttgtgccactattattgttgc |
104 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||||||||||| || |||| |||||| ||||||||| |
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| T |
36355459 |
gtgttagcattttcatggtacataaactatgaatacatgtacgaggacatgtttattcaaatgaagattttgttggcctttgtaccactaatattgttgc |
36355360 |
T |
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| Q |
105 |
ttgttgttcattgtctctcaagtggagaatcgttcactttacctttgccagaggagagtgaatctttgcatagagctggtggatctccatggggagtggc |
204 |
Q |
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|||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| || ||| | ||||||||||||||||| ||||||||||| || |
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| T |
36355359 |
ttgttgttcattgtctctcaagtgaaggatcgttccctttacctttgccagaggagagagagtctctacatagagctggtggatcaccatggggagttgc |
36355260 |
T |
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| Q |
205 |
actcttgcttgtgttcctcttgtctatgatttcttatcagtcttcttttcatgaacgttggtttccttt |
273 |
Q |
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||| |||||||||||||| |||| ||||| || |||||||||||||||||||||||||||||||||| |
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| T |
36355259 |
actgttgcttgtgttccttttgttcatgatggctcatcagtcttcttttcatgaacgttggtttccttt |
36355191 |
T |
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