View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4153_low_4 (Length: 345)
Name: NF4153_low_4
Description: NF4153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4153_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 39487511 - 39487837
Alignment:
| Q |
1 |
actggatgagttgggatcgattaggaagagcaaaaagcaaaggaggacttggcttcggaggcttcagtgattttaacaaggcgcttctagggaagcaatg |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39487511 |
actggatgagttgggatcggttaggaagagcaaaaagcaaaggaggacttggcttcagaggcttcagtgattttaacaaggcgcttctagggaagcaatg |
39487610 |
T |
|
| Q |
101 |
ttggcgactcatgaacaacgaacactccctcctttctcgggtgttcaagagtaggtacttttccagatcatgttttttggatgctcaaattggctaccag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
39487611 |
ttggcgactcatgaacaacgaacactccctcctttctcgggtgttcaagagtatgtactttgccagatcatgttttttggatgctcaaattgactaccag |
39487710 |
T |
|
| Q |
201 |
cccagctatgcttggcgcagtttgatgaatgctaaatctgtgattgatctcggatggagatggtcgattggtaatgggcaacaagttaaaatctggaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39487711 |
cccagctatgcttggcgcagtttgatgaatgctaaatctgtgattgatctcggatggagatggtcgattggtaatgggcaacaagttaaaatctggaaag |
39487810 |
T |
|
| Q |
301 |
acccttggcttcctgaactgtcgagct |
327 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
39487811 |
acccttggcttcctgaactgtcgagct |
39487837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 5807160 - 5806936
Alignment:
| Q |
93 |
aagcaatgttggcgactcatgaacaacgaacactccctcctttctcgggtgttcaagagtaggtacttttccagatcatgttttttggatgctcaaattg |
192 |
Q |
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|||||||| ||||| || ||| ||| |||||||| |||||||| ||||||| ||||||||||||||| | ||| || |||||||| | || | | || |
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| T |
5807160 |
aagcaatggtggcggctgatgtccaatgaacactctctcctttcatgggtgtttaagagtaggtactttccgagaacaagttttttgaaggcacgtagtg |
5807061 |
T |
|
| Q |
193 |
gctaccagcccagctatgcttggcgcagtttgatgaatgctaaatctgtgattgatctcggatgg-agatggtcgattggtaatgggcaacaagttaaaa |
291 |
Q |
| |
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| || ||||| || ||||||||| | || ||| ||||| ||||| | |||||||| || | | || ||||| ||||| || ||||||||||||| || |
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| T |
5807060 |
gttatcagcctagttatgcttggagaagcttgtgtaatgcaaaatcaataattgatcttggtttgcaggtggtcaattggaaacgggcaacaagttagaa |
5806961 |
T |
|
| Q |
292 |
tctggaaagacccttggcttcctga |
316 |
Q |
| |
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| ||||| ||||||||||||||||| |
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| T |
5806960 |
tatggaaggacccttggcttcctga |
5806936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 46033634 - 46033959
Alignment:
| Q |
1 |
actggatgagttgggatcgattaggaagagcaaaaagcaaaggaggacttggcttcggaggcttcagtgattttaacaaggcgcttctagggaagcaatg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46033634 |
actggatgagttgggatcggttaggaagagcaaaaagcaaaggaggacttggcttcagaggcttcagtgattttaacaaggcacttctagggaagcaatg |
46033733 |
T |
|
| Q |
101 |
ttggcgactcatgaacaacgaacactccctcctttctcgggtgttcaagagtaggtacttttccagatcatgttttttggatgctcaaattggctaccag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
46033734 |
ttggcgactcatgaacaacgaacactccctcctttctcgggtgttcaagagtaggtactttgccagatcatgttttttggatgctcaaattggctgccag |
46033833 |
T |
|
| Q |
201 |
cccagctatgcttggcgcagtttgatgaatgctaaatctgtgattgatctcggatggagatggtcgattggtaatgggcaacaagttaaaatctggaaag |
300 |
Q |
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||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
46033834 |
cccagctatgcttggtgtagtttgatgaatgctaaatctgtaattgatctcggatggagatggtcgattggtaatgggcaa-aagttaaaatttggaaag |
46033932 |
T |
|
| Q |
301 |
acccttggcttcctgaactgtcgagct |
327 |
Q |
| |
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||| |||||||||||||||||| |||| |
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| T |
46033933 |
acctttggcttcctgaactgtcaagct |
46033959 |
T |
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