View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4153_low_8 (Length: 243)
Name: NF4153_low_8
Description: NF4153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4153_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5575018 - 5575249
Alignment:
| Q |
1 |
tatcaaacacaaatcggatcaaacttgaggtagcagaacatattacacttattttatttaattctagtttacagta----gtacaatttgatgatattaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
5575018 |
tatcaaacacaaatcggatcaaacttgaggtagcagaacatattacacttattttatttaattctagtttacagtagtccgtacaatt---tgatattaa |
5575114 |
T |
|
| Q |
97 |
aagattgtttcaaatgtaggtaggacaag----aatgaacgtgtacaaataacttgaacctatttaactagaggcactaagctgtgaagtgaaatccaat |
192 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5575115 |
aagattgtttcaaatgtaggtaggacaagaattaatgaacgtgtacaaataacttgaacctatttaactagaggcactaagctgtgaagtgaaatccaat |
5575214 |
T |
|
| Q |
193 |
tccatttcaatttcttgttcaacaaggttcttaat |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5575215 |
tccatttcaatttcttgttcaacaaggttcttaat |
5575249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 5579791 - 5579975
Alignment:
| Q |
33 |
gcagaacatattacacttattttatttaattctagtttacagtagtacaatttgatgatattaaaagattgtttcaaatgtaggtaggacaagaatgaac |
132 |
Q |
| |
|
||||||| ||||||||||||| | |||||||||||||||| || | ||||||| || |||| || || ||||||||||||||||||||||||||| |
|
|
| T |
5579791 |
gcagaaccaattacacttatttgacttaattctagtttacaataatgtcatttgat---atgaaaatatggtatcaaatgtaggtaggacaagaatgaac |
5579887 |
T |
|
| Q |
133 |
gtgtacaaataacttgaacctatttaactagaggcactaagctgtgaagtgaaatccaattccatttcaatttcttgttcaacaaggt |
220 |
Q |
| |
|
| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
5579888 |
gcatacaaataacttgaacatgtttaactagaggcactaagctgtgaagtgaaatccaattccatctcaatttcttgtgcaacaaggt |
5579975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 5581488 - 5581659
Alignment:
| Q |
1 |
tatcaaacacaaatcggatcaaacttgaggtagcagaacatattacacttattttatttaattctagtttacagtagtacaatttgatgatattaaaaga |
100 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||||| |||||||| |||| |||| ||||||||||| | || | | ||| |||||| |||||| |
|
|
| T |
5581488 |
tatcaaacacaaatcaaatcaaacttaaggcgagagaaccaattacactaatttgattttattctagtttataataatgctatt---tgatatgaaaaga |
5581584 |
T |
|
| Q |
101 |
ttgtttcaaatgtaggtaggacaagaatgaacgtgtacaaataacttgaacctatttaactagaggcactaagct |
175 |
Q |
| |
|
||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5581585 |
ttgcttcaaatgtaggtaggaaaagaatgaatgtatacaaataacttgaacctatttaacttgaggcactaagct |
5581659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 5591887 - 5591974
Alignment:
| Q |
140 |
aataacttgaacctatttaactagaggcactaagctgtgaagtgaaatccaattccatttcaatttcttgttcaacaaggttcttaat |
227 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
5591887 |
aataacttgaacatatttaactcgaggaactaagctgtgaagtgaaatccaattccatctcaatttcttgttcaacaaggtgcttaat |
5591974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 5572197 - 5572301
Alignment:
| Q |
123 |
aagaatgaacgtgtacaaataacttgaacctatttaactagaggcactaagctgtgaagtgaaatccaattccatttcaatttcttgttcaacaaggttc |
222 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||||| |||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||| | |
|
|
| T |
5572197 |
aagaatgaacacgtacaagtaacttgaacacatttaactcgaggcactaaactgtgaagtgatatcatattccatttcaatttcttgttcaacaaggtgc |
5572296 |
T |
|
| Q |
223 |
ttaat |
227 |
Q |
| |
|
||||| |
|
|
| T |
5572297 |
ttaat |
5572301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 5585649 - 5585693
Alignment:
| Q |
140 |
aataacttgaacctatttaactagaggcactaagctgtgaagtga |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
5585649 |
aataacttgaacctatttaactagaggcactaagctttgatgtga |
5585693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5572120 - 5572195
Alignment:
| Q |
1 |
tatcaaacacaaatcggatcaaacttgaggtagcagaacatattacacttattttatttaattctagtttacagta |
76 |
Q |
| |
|
|||||||||||||| | ||||||| | |||| | ||||| ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
5572120 |
tatcaaacacaaatagaatcaaacataaggtggtagaaccaattgcacttatttgatttaattctagtttacagta |
5572195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 5585535 - 5585567
Alignment:
| Q |
95 |
aaaagattgtttcaaatgtaggtaggacaagaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
5585535 |
aaaagattgtttcaaatgtaggtaggaaaagaa |
5585567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University