View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_high_14 (Length: 373)
Name: NF4154_high_14
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 85 - 353
Target Start/End: Original strand, 18905262 - 18905552
Alignment:
| Q |
85 |
gcccatacaggtttgattcgaaatctggattgaagaatttttatgcgtgaaccttcatcatgaactgaatcttcatcaaaattcatcattccgaatatga |
184 |
Q |
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|||||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||| ||| |
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| T |
18905262 |
gcccatacagatttgattcaaaatatggattgaagaaattttatgcgtgaaccttcatcaagaactgaatcttcatcaaactccatcatttcgaatctga |
18905361 |
T |
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| Q |
185 |
attagatccgaatctggatctgccatagctctctcggatccagcgctccaagaatccttgtatgcaatagcgatttt----------------------c |
262 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | |
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| T |
18905362 |
attagatccgaatctggatatgccatagctctctcggacccagcgctccaagaatccttgtatgcagtagcgattttcggaatcctcctttgagattttc |
18905461 |
T |
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| Q |
263 |
gaattttattactttgtcaataacaatattttgattcttacaggggccgaatggcgttggggcgtttttgacagtttctttggaaggacct |
353 |
Q |
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| T |
18905462 |
ggattttattactttgtcaacaacaatattttgattcttacaggggccgagtggcgttggggcgtttttgacagtttctttggaaggacct |
18905552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 11938473 - 11938365
Alignment:
| Q |
87 |
ccatacaggtttgattcgaaatctggattgaagaatttttatgcgtgaaccttcatcatgaactgaatcttcatcaaaattcatcattccgaatatgaat |
186 |
Q |
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| T |
11938473 |
ccatacaagtttgattcaaaatatggattgaagaatttgtacgcgtgaaccttcatcaagaactgaatcttcatcaaaatccatcattccgtatctggat |
11938374 |
T |
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| Q |
187 |
tagatccga |
195 |
Q |
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| T |
11938373 |
tggatccga |
11938365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 18905187 - 18905225
Alignment:
| Q |
10 |
catcatcattttgttgaagtagaaacaagatcatcctta |
48 |
Q |
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| T |
18905187 |
catcatcattttgttgaagtagaaacaagatcatcctta |
18905225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 11938553 - 11938515
Alignment:
| Q |
10 |
catcatcattttgttgaagtagaaacaagatcatcctta |
48 |
Q |
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| T |
11938553 |
catcatccttttgttgaagtagaaacaagatcatcctta |
11938515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 85 - 348
Target Start/End: Original strand, 43899849 - 43900117
Alignment:
| Q |
85 |
gcccatacaggtttgattcgaaatctggattgaagaatttttatgcgtgaaccttcatcatgaactgaatcttcatcaaaattcatcattccgaatatga |
184 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| ||||||| ||||| |
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| T |
43899849 |
gcccatacaggtttgattcaaaatctggattgaagaatttttatgcgtaaaccttcatcaagaactgaatctttatcaaaatccatcatttcgaat---- |
43899944 |
T |
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| Q |
185 |
attagatccgaatctggatctgccatagctctctcggatccagcgctccaagaatccttgtatgcaatagcgatttt----------------------c |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
43899945 |
-------------ctggatctgccatagctctctcggatccagcgctccaagaatccttgtatgcagtagcgattttcggaatcctcctttgagattttc |
43900031 |
T |
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| Q |
263 |
gaattttattactttgtcaataacaatattttgattcttacaggggccgaatggcgttggggcgtttttgacagtttctttggaag |
348 |
Q |
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| T |
43900032 |
ggattttattactttgtcaacaacaatattttgattcttacaagggccgagtggcgttggggcatttttgacagtttctttggaag |
43900117 |
T |
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