View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4154_high_23 (Length: 293)
Name: NF4154_high_23
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 2451155 - 2451424
Alignment:
| Q |
9 |
agcaaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2451155 |
agcaaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagt |
2451254 |
T |
|
| Q |
109 |
gcaagatgctttagaaagggttatgattggaaggacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatttgattgttgttttggat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2451255 |
gcaagatgctttagaaagggttatgattggaagaacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatatgattgttgttttggat |
2451354 |
T |
|
| Q |
209 |
aagggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggaccaagtggagcttattact |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2451355 |
aagggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggaccaagtggagcttattact |
2451424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 2672264 - 2671997
Alignment:
| Q |
11 |
caaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagtgc |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |
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|
| T |
2672264 |
caaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtcc |
2672165 |
T |
|
| Q |
111 |
aagatgctttagaaagggttatgattggaaggacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatttgattgttgttttggataa |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| |||||| || || |
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|
| T |
2672164 |
aagatgctttagaaagggttatggttggaaggacaagtgtggttgtagcacataggttgagtactatacaaaattgcgatttgattgctgttttagacaa |
2672065 |
T |
|
| Q |
211 |
gggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggaccaagtggagcttattact |
278 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2672064 |
gggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggccaagtggagcttattact |
2671997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 2592381 - 2592648
Alignment:
| Q |
11 |
caaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagtgc |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
2592381 |
caaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtcc |
2592480 |
T |
|
| Q |
111 |
aagatgctttagaaagggttatgattggaaggacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatttgattgttgttttggataa |
210 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||| |||||||||||| |
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|
| T |
2592481 |
aagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgttttggataa |
2592580 |
T |
|
| Q |
211 |
gggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggaccaagtggagcttattact |
278 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
2592581 |
gggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggccaagtggagcatattact |
2592648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 2641104 - 2640837
Alignment:
| Q |
11 |
caaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagtgc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2641104 |
caaaggattgcaatagctagagctatattgaagaatccaaaggtgttacttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtgc |
2641005 |
T |
|
| Q |
111 |
aagatgctttagaaagggttatgattggaaggacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatttgattgttgttttggataa |
210 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
2641004 |
aagatgctttagaaagagttatggttggaaggacaagtgtagttgtcgcacataggttgagtactatacaaaattgtgatttgattgctgttttggataa |
2640905 |
T |
|
| Q |
211 |
gggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggaccaagtggagcttattact |
278 |
Q |
| |
|
||| | |||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
2640904 |
ggggattgttgttgaaaaaggaacacattcatctttgttgtctttgggaccaagtggagtttattact |
2640837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 2568889 - 2568622
Alignment:
| Q |
11 |
caaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagtgc |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
2568889 |
caaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtcc |
2568790 |
T |
|
| Q |
111 |
aagatgctttagaaagggttatgattggaaggacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatttgattgttgttttggataa |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2568789 |
aagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtgatttgattgctgttttggataa |
2568690 |
T |
|
| Q |
211 |
gggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggaccaagtggagcttattact |
278 |
Q |
| |
|
||| | |||| |||||||||||||||||||| ||| ||||| ||||| |||||||| |||||||||| |
|
|
| T |
2568689 |
gggcattgttgttgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtgcttattact |
2568622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 2440435 - 2440702
Alignment:
| Q |
11 |
caaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagtgc |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
2440435 |
caaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtcc |
2440534 |
T |
|
| Q |
111 |
aagatgctttagaaagggttatgattggaaggacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatttgattgttgttttggataa |
210 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
2440535 |
aagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactattcaaaactgtgatttgattgctgttttggataa |
2440634 |
T |
|
| Q |
211 |
gggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggaccaagtggagcttattact |
278 |
Q |
| |
|
||| | |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2440635 |
gggaattgttgttgagaaaggaacacattcatctttgttgtctaaagggccaagtggagcatattact |
2440702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 2596448 - 2596181
Alignment:
| Q |
11 |
caaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagtgc |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
2596448 |
caaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtcc |
2596349 |
T |
|
| Q |
111 |
aagatgctttagaaagggttatgattggaaggacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatttgattgttgttttggataa |
210 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
2596348 |
aagatactttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtgatttgattgctgtcttggataa |
2596249 |
T |
|
| Q |
211 |
gggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggaccaagtggagcttattact |
278 |
Q |
| |
|
||| | |||| ||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
2596248 |
gggaattgttgttgagaaaggaacacattcgtctttgttatctttgggaccaagtggagtttattact |
2596181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 2623925 - 2624192
Alignment:
| Q |
11 |
caaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagtgc |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
2623925 |
caaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtcc |
2624024 |
T |
|
| Q |
111 |
aagatgctttagaaagggttatgattggaaggacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatttgattgttgttttggataa |
210 |
Q |
| |
|
|||| ||||||||| ||| ||| ||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
2624025 |
aagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgttttggataa |
2624124 |
T |
|
| Q |
211 |
gggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggaccaagtggagcttattact |
278 |
Q |
| |
|
||| |||||| ||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2624125 |
gggaagtgttgttgagaatggaacacattcatccttgttgtctaaagggccaagtggagcatattact |
2624192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 17870300 - 17870107
Alignment:
| Q |
11 |
caaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaagttagtgc |
110 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||| | | ||||| ||| |||||| |
|
|
| T |
17870300 |
caaaggatagcaatagctagagccatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcacttgataataattcagaaaaggtagtgc |
17870201 |
T |
|
| Q |
111 |
aagatgctttagaaagggttatgattggaaggacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatttgattgttgtttt |
204 |
Q |
| |
|
||||||| || | | ||| ||| |||||||||| ||||||||||| || |||||||||||||| ||||| ||||||||| | |||| |||||| |
|
|
| T |
17870200 |
aagatgcattgaataaggtaatggttggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgtttt |
17870107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 39157725 - 39157765
Alignment:
| Q |
9 |
agcaaaggattgcaatagctagagctatattgaagaatcca |
49 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
39157725 |
agcaaaggatagcaatagctagagcaatgttgaagaatcca |
39157765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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