View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_high_31 (Length: 264)
Name: NF4154_high_31
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_high_31 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 32812873 - 32812610
Alignment:
| Q |
1 |
tcatcaccaccttcacctccgtgaaaagaagggaacaatagtataatatccttcttatgataaactactggacaacaatacttaggcttcccccatggat |
100 |
Q |
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| T |
32812873 |
tcatcaccaccttcaactccgtgaaaagaagggaacaatagtataatatccttcttatgataaaccactggacaacaatacttaggcttcccccatggat |
32812774 |
T |
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| Q |
101 |
actccacctcttcaaaccctaacctccaccatgaagacaccaaaagctctccattcggaaaaccattatacaattctccccaatcaataatagaccttgc |
200 |
Q |
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| T |
32812773 |
actccacctcttcaaaccctaacctccaccatgaagacaccaaaagctctccattcggaaaaccattatacaattctccccaatcaataatagaccttgc |
32812674 |
T |
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| Q |
201 |
atactcatcacccattctttttgtaccctcccacaccatctccaccaaccttgagaattcacct |
264 |
Q |
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| T |
32812673 |
atactcatcacccattctttttgtaccctcccacaccatctccaccaaccttgagaattcacct |
32812610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 32830399 - 32830140
Alignment:
| Q |
5 |
caccaccttcacctccgtgaaaagaagggaacaatagtataatatccttcttatgataaactactggacaacaatacttaggcttcccccatggatactc |
104 |
Q |
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| T |
32830399 |
caccaccttcacctccattaaaagaaggaaataatagtataatatccttcctatgataaaccacaggacaacaatacttaggcttcccccatggatactc |
32830300 |
T |
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| Q |
105 |
cacctcttcaaaccctaacctccaccatgaagacaccaaaagctctccattcggaaaaccattatacaattctccccaatcaataatagaccttgcatac |
204 |
Q |
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| T |
32830299 |
cacctcttcaaaccctagcctccaccatgaagacaccaaaacatccccatttggaaaaccattatacaactctccccaatcaataatagatcttgcatat |
32830200 |
T |
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| Q |
205 |
tcatcacccattctttttgtaccctcccacaccatctccaccaaccttgagaattcacct |
264 |
Q |
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| T |
32830199 |
tcatcactcattcttcttgaaccctcttccaccatctccaccaaccttgaaaattcacct |
32830140 |
T |
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