View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_high_34 (Length: 250)
Name: NF4154_high_34
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 51876547 - 51876310
Alignment:
| Q |
1 |
tatgcgcatgttcatgtattacataaaaattagtctctcgcaacatgacaaaccaaatcaaagtttgaatctagatcgagaaaaattataatttcaataa |
100 |
Q |
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| T |
51876547 |
tatgcgcatgttcatgtattacataaaaattagactctcgcaacatgacaaatcaaatcaaagtttgactctcgatcgagaaaaattgtaatttcaataa |
51876448 |
T |
|
| Q |
101 |
ttgttcaacaaaatgtacggattatcttcaagaaaaatatagtatgtagtgtgaggcttagatgcacaagaaaaatcatggcccgtacaatccatgagag |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51876447 |
ttgttcaacaaaatgtactgattatcttcaagaaaaatatagtatgtagtgtgaggcttagatgcacaagaaaaatcatggcccgtacaatccatgagag |
51876348 |
T |
|
| Q |
201 |
ttcaacattggaagaattaaagtgtttttcagtagaat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
51876347 |
ttcaacattggaagaattaaagtgtttttcagtagaat |
51876310 |
T |
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