View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_high_45 (Length: 236)
Name: NF4154_high_45
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 17581901 - 17581672
Alignment:
| Q |
1 |
agttacggtgcagtatttgatagtggcttgcttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagcttaaacaagtttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17581901 |
agttacggtgcagtatttgatagtggcttgcttaaatggcttaaatccaagaaatagaattttgttctctatgtaagttttggcagcttaaacaagtttc |
17581802 |
T |
|
| Q |
101 |
caacatcttggaactttggagggtatgtttttgtttacactcaaggagttgagttgttgcaaaatgaaatgacttcaagtttattcgattcgggttttga |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17581801 |
caacatcttggaactttggagggtgtgtttttgtttacactcaaggagttgagttgttgcaaaatgaaatgacttcaagtttattcgattcgggttttga |
17581702 |
T |
|
| Q |
201 |
tgtctaaaaaccatgtaaatttgatgatgt |
230 |
Q |
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|||||||||||||||||||||| ||||||| |
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| T |
17581701 |
tgtctaaaaaccatgtaaatttaatgatgt |
17581672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 17572070 - 17571945
Alignment:
| Q |
105 |
atcttggaactttggagggtatgtttttgtttacactcaaggagttgagttgttgcaaaatgaaatgacttcaagtttattcgattcgggttttgatgtc |
204 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
17572070 |
atcttggaactttggagggtgggttttggtttacactcaaggagtcgacttgttgcaaaatgaaatgacttcaagtttattcgattcgggatttgatatc |
17571971 |
T |
|
| Q |
205 |
taaaaaccatgtaaatttgatgatgt |
230 |
Q |
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||||||||||||||| || ||||||| |
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| T |
17571970 |
taaaaaccatgtaaacttaatgatgt |
17571945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 17572808 - 17572720
Alignment:
| Q |
20 |
atagtggcttgcttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagcttaaacaagtttccaacatct |
108 |
Q |
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|||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17572808 |
atagtgacttgcttaaatggctaaactccaagaaagagaattctgttctctatgtaagttttggcagcttaaacaagttcccaacatct |
17572720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 17619904 - 17619992
Alignment:
| Q |
20 |
atagtggcttgcttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagcttaaacaagtttccaacatct |
108 |
Q |
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|||||| ||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
17619904 |
atagtgacttgcttaaatggctgcactccaagaaagagaattctgttatctatgtaagttttggcagcttaaacaagttcccaccatct |
17619992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 17602400 - 17602505
Alignment:
| Q |
115 |
tttggagggtatgtttttgtttacactcaaggagttgagttgttgcaaaatgaaat-gacttcaagtttattcgattcgggttttgatgtctaaaaacca |
213 |
Q |
| |
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|||| ||||| | |||||| ||||| |||||||||| | |||||||||| |||||| ||||||| |||||||||||| ||| |||||||||||||||||| |
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| T |
17602400 |
tttgtagggtgtatttttgcttacaatcaaggagttaacttgttgcaaattgaaattgacttcaggtttattcgatttgggatttgatgtctaaaaacca |
17602499 |
T |
|
| Q |
214 |
tgtaaa |
219 |
Q |
| |
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|||||| |
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| T |
17602500 |
tgtaaa |
17602505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 31 - 230
Target Start/End: Original strand, 14756401 - 14756600
Alignment:
| Q |
31 |
cttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagcttaaacaagtttccaacatcttggaactttggagggtatgttt |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||| |
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| T |
14756401 |
cttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtttacaacatcttggaactctggagggtgtgttt |
14756500 |
T |
|
| Q |
131 |
ttgtttacactcaaggagttgagttgttgcaaaatgaaatgacttcaagtttattcgattcgggttttgatgtctaaaaaccatgtaaatttgatgatgt |
230 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| |
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| T |
14756501 |
ttgtttacaatcaaggagttgacttgttgcaaaatgaaatgacttcaagtttattcgattcggtatttgatgtctaaaaaccatgtaaacttaatgatgt |
14756600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 14709668 - 14709542
Alignment:
| Q |
105 |
atcttggaactttggagggtatgtttttgtttacactcaaggagttgagttgttgcaaaatgaaatgactt-caagtttattcgattcgggttttgatgt |
203 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||| |
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| T |
14709668 |
atcttcgaactttggagggtgggttttggtttacactcaaggagttgacttgttgcaaaatgaaatgacttccaagtttatttgattcgggatttgatgt |
14709569 |
T |
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| Q |
204 |
ctaaaaaccatgtaaatttgatgatgt |
230 |
Q |
| |
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|||||||||||||||| || ||||||| |
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| T |
14709568 |
ctaaaaaccatgtaaacttaatgatgt |
14709542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 14710398 - 14710317
Alignment:
| Q |
27 |
cttgcttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagcttaaacaagtttccaacatct |
108 |
Q |
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|
|||||||||||||||||| || |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
14710398 |
cttgcttaaatggcttaactctaagaaagagaattctgttctctatctaagttttggcagcttaaacaagttcccaacatct |
14710317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 14721791 - 14721686
Alignment:
| Q |
115 |
tttggagggtatgtttttgtttacactcaaggagttgagttgttgcaaaatgaaat-gacttcaagtttattcgattcgggttttgatgtctaaaaacca |
213 |
Q |
| |
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|||| ||||| | |||||| ||||| |||||||||| | |||||||||| |||||| ||||||| |||||||||||| ||| | |||||||||||||||| |
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| T |
14721791 |
tttgtagggtgtatttttgcttacaatcaaggagttaacttgttgcaaattgaaattgacttcaggtttattcgatttgggatctgatgtctaaaaacca |
14721692 |
T |
|
| Q |
214 |
tgtaaa |
219 |
Q |
| |
|
|||||| |
|
|
| T |
14721691 |
tgtaaa |
14721686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 12613421 - 12613510
Alignment:
| Q |
19 |
gatagtggcttgcttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagcttaaacaagtttccaacatct |
108 |
Q |
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|||||| | ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| | |||||||| ||| ||||| |
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| T |
12613421 |
gatagtagtttgtttaaatggcttaattccaagaaagagaattctgttctctatgtaagttttggtagcatgaacaagttcccatcatct |
12613510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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