View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4154_high_51 (Length: 226)
Name: NF4154_high_51
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_high_51 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 32458137 - 32457923
Alignment:
| Q |
11 |
gcatctagtggaagcatatcccagtggctcactccaaaaccctttagaaatcgtgtttatgtgatcgtctgctcgtcaaaatgtgttttacaattgatct |
110 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32458137 |
gcatctagtggaagcatattccagtggctcactccaaa-ccctttagaaatcgtgtttatgtgatcgtctgctcgtcaaaatgtgttttacaattgacct |
32458039 |
T |
|
| Q |
111 |
aggagttcaatctttatagacgcccctaacttaggaacgaattaaccaaattaaataacaaagtaatcgatttaaaattcatagaatcattttaagttac |
210 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32458038 |
aagagttcaatctttatagacgcccctaacttaggaacgaattaaccaaattaaataacaaagtaatcgatttaaaattcatagaatcattttaagttac |
32457939 |
T |
|
| Q |
211 |
atgaacaactaattgc |
226 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32457938 |
atgaacaactaattgc |
32457923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 26807516 - 26807589
Alignment:
| Q |
151 |
attaaccaaattaaataacaaagtaatcgatttaaaattcatagaatcattttaagttacatgaacaactaatt |
224 |
Q |
| |
|
||||||||||| |||||| ||| |||| ||| || || ||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
26807516 |
attaaccaaatgaaataagaaaataattcattgaatatccatagaatcatttaaagttacatgaacaaataatt |
26807589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 26470770 - 26470697
Alignment:
| Q |
151 |
attaaccaaattaaataacaaagtaatcgatttaaaattcatagaatcattttaagttacatgaacaactaatt |
224 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||| ||||| | |||||||| |||||| ||| |||||||||| |
|
|
| T |
26470770 |
attaaccaagtgaaataacaaagtaatcgacttaatattcagataatcatttaaagttaaatgcacaactaatt |
26470697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 26150324 - 26150384
Alignment:
| Q |
163 |
aaataacaaagtaatcgatttaaaattcatagaatcattttaagttacatgaacaactaatt |
224 |
Q |
| |
|
|||||| ||||||||||| | ||| ||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
26150324 |
aaataataaagtaatcgactgaaa-ttcatagaatcatttaaagttacatgaacaaataatt |
26150384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 28707771 - 28707703
Alignment:
| Q |
151 |
attaaccaaattaaa-taacaaagtaatcgatttaaaattcatagaatcattttaagttacatgaacaa |
218 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| |||| ||| | ||||| |||| ||||||||||||||| |
|
|
| T |
28707771 |
attaaccaaatgaaaataacaaagtaatcgacttaatattaagagaattatttaaagttacatgaacaa |
28707703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 17813280 - 17813349
Alignment:
| Q |
153 |
taaccaaattaaataacaaagtaatcgatttaaaattcatagaatcattttaagttacatgaacaactaatt |
224 |
Q |
| |
|
||||||||| ||||| |||||||||||| | | | |||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
17813280 |
taaccaaataaaata-caaagtaatcgactgata-ttcatagaatgatttaaagttacatgaacaactaatt |
17813349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 16802039 - 16801967
Alignment:
| Q |
151 |
attaaccaaattaaataacaaagtaatcgatttaaaattcatagaatcattttaagttacatgaacaactaatt |
224 |
Q |
| |
|
|||||| |||| |||||||||||||| |||| ||||| |||||||||| | ||||||||||||||| ||||| |
|
|
| T |
16802039 |
attaactaaatataataacaaagtaattgatt-aaaatctatagaatcatataaagttacatgaacaaataatt |
16801967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 16841325 - 16841253
Alignment:
| Q |
151 |
attaaccaaattaaataacaaagtaatcgatttaaaattcatagaatcattttaagttacatgaacaactaatt |
224 |
Q |
| |
|
|||||| |||| |||||||||||||| |||| ||||| |||||||||| | ||||||||||||||| ||||| |
|
|
| T |
16841325 |
attaactaaatataataacaaagtaattgatt-aaaatctatagaatcatataaagttacatgaacaaataatt |
16841253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University