View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_high_54 (Length: 216)
Name: NF4154_high_54
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 48716497 - 48716649
Alignment:
| Q |
51 |
ctatgttgagtgcactgcacaacactacactcagtcaaggaaacgggtagttctttcattttcgtttactaattaccatatattataattggtcatcgtg |
150 |
Q |
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| T |
48716497 |
ctatgttaagtgcactgcacaacactacactcagtcaaggaaacaggtagttctttcattttcgtttaccttttaccatatattataattggtcatcgtg |
48716596 |
T |
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| Q |
151 |
aaatagg---nnnnnnnctaaatacgtttaataaacattatatacgtgccttc |
200 |
Q |
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| T |
48716597 |
aaatatgaaaaaaaaaaccaaatacgtttaataaacattatatacgtgccttc |
48716649 |
T |
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