View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4154_high_6 (Length: 467)

Name: NF4154_high_6
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4154_high_6
NF4154_high_6
[»] chr2 (10 HSPs)
chr2 (1-462)||(12073621-12074074)
chr2 (17-366)||(12046509-12046859)
chr2 (1-212)||(12050906-12051116)
chr2 (1-367)||(12058064-12058428)
chr2 (1-212)||(12066363-12066573)
chr2 (1-212)||(12053434-12053644)
chr2 (49-203)||(12063790-12063942)
chr2 (220-367)||(12050706-12050855)
chr2 (288-367)||(12066151-12066231)
chr2 (288-365)||(12053216-12053295)
[»] chr4 (1 HSPs)
chr4 (1-211)||(30353515-30353724)
[»] chr3 (2 HSPs)
chr3 (393-462)||(12806988-12807057)
chr3 (393-462)||(14457904-14457973)
[»] chr1 (1 HSPs)
chr1 (393-462)||(50291069-50291138)


Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 12074074 - 12073621
Alignment:
Q  1 ttttccaacgtagcaaattctttataatcaacatcacattataagttacataagtattcttaaattgatatttagaaataccataattgaactgaaacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12074074 ttttccaacgtagcaaattctttataatcaacatcacattataagttacataagcattcttaaattgatatttagaaataccataattgaactgaaacaa 12073975  T
Q  101 agttgaagaaaaaagttgcaaagaccataaagaacagtggtatataaaagttggctcaatttttaactgtgtgagattgttcactttttcaatatgattt 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12073974 agttgaagaaaaaagttgcaaagaccataaagaatagtggtatataaaagttggctcaatttttaactgtgtgagattgttcactttttcaatatgattt 12073875  T
Q  201 cataccttctgcttttaattgtgccttcttcaaccacttgtttggctttgcttttctgtaaacatttactaaacannnnnnnctttactaaacatgaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||       ||||||||||||||||||    
T  12073874 cataccttctgcttttaattgtgccttcttcaaccacttgtttggc------tttctgtaaacatttactaaacatttttttctttactaaacatgaaat 12073781  T
Q  301 tagaaaagtataatcctactagaaaaatctcgcaccaacataaaccacgctactgataaatggaacaaccatgaagaggccgtgttggctttgctaagct 400  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||    
T  12073780 tagaaaagtacaatcctactggaaaaatctcgcaccaacataaaccacgctactgataaatggaacaaccttga--aggccgtgttggctttgctaagct 12073683  T
Q  401 tgaatggttggtttatgatgtcttttttctgcataataatcattgttttaatttccagtttt 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12073682 tgaatggttggtttatgatgtcttttttctgcataataatcattgttttaatttccagtttt 12073621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 12046859 - 12046509
Alignment:
Q  17 attctttataatcaacatcacattataagttacataagtattcttaaattgatatttagaaataccataattgaactgaaacaaagttgaagaaaaaagt 116  Q
    |||||||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||  ||||||| ||||||||||  ||||| |||||||||    
T  12046859 attctttataatcaacctcatattataagttacatgagcattcttaaattgatatttagaaatctcataatttaactgaaacagggttgaggaaaaaagt 12046760  T
Q  117 tgcaaagaccataaagaacagtggtatataaaagttggctcaatttttaactgtgtgagattgttcactttttcaatatgatttcataccttctgctttt 216  Q
     ||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12046759 ggcaaagaccataaagaatagtagtatataaaagttgactcaatttttaactgtgtgagattgttcactttttcaatatgatttcataccttttgctttt 12046660  T
Q  217 aattgtgccttcttcaaccacttgtttggctttgcttttctgtaaacatttactaaacannnnnnnctttactaaacatgaaattagaaaagtataatcc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| || |||||    
T  12046659 aattgtgccttcttcaaccacttgtttggctttgcttttctgtaaacatttactaaacatttttttctttactaaacatgaaattagaaaattacaatcc 12046560  T
Q  317 tactag-aaaaatctcgcaccaacataaaccacgctactgataaatggaac 366  Q
    |||| | ||||||||||||||||||||||| ||| ||||||||||||||||    
T  12046559 tactggaaaaaatctcgcaccaacataaactacgttactgataaatggaac 12046509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 12051116 - 12050906
Alignment:
Q  1 ttttccaacgtagcaaattctttataatcaacatcacattataagttacataagtattcttaaattgatatttagaaataccataattgaactgaaacaa 100  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||||    
T  12051116 ttttccaacgtagaaaat-ctttataatcaacctcacattataagttacataagcattcttaaaatgatatttagaaatatcataattgaactgcaacaa 12051018  T
Q  101 agttgaagaaaaaagttgcaaagaccataaagaacagtggtatataaaagttggctcaatttttaactgtgtgagattgttcactttttcaatatgattt 200  Q
    |||||| |||||| || ||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12051017 agttgaggaaaaacgtggcagagaccataaagaatagtagtatataaaagttggctcattttttaactgtgtgagattgttcactttttcaatatgattt 12050918  T
Q  201 cataccttctgc 212  Q
    ||||||||||||    
T  12050917 cataccttctgc 12050906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 12058428 - 12058064
Alignment:
Q  1 ttttccaacgtagcaaattctttataatcaacatcacattataagttacataagtattcttaaattgatatttagaaataccataattgaactgaaacaa 100  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||     
T  12058428 ttttccagcgtagcaaattctttataatcaacctcacattataagttacataagcattcataaattgatatttagaaatatcataattgaactgaaaca- 12058330  T
Q  101 agttgaagaaaaaagttgcaaagaccataaagaacagtggtatataaaagttggctcaatttttaactgtgtgagattgttcactttttcaatatgattt 200  Q
             ||||||| | | ||||||||||||| | |||||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||    
T  12058329 --------caaaaagtggtagagaccataaagaatattggtatataaaagttggctcaa-ttttgactgtatgggattgttcactttttcaatatgattt 12058239  T
Q  201 cataccttctgctttta------att--gtgccttcttcaaccacttgtttggctttgcttttctgt-aaacatttactaaacannnnnnnctttactaa 291  Q
    |||||||||||| || |      |||   | |||||||||||||||||||||||||||||||||| | ||||||| ||||||||       ||||||| |    
T  12058238 cataccttctgccttcaagcagcattacataccttcttcaaccacttgtttggctttgcttttctatgaaacattgactaaacatttttttctttactca 12058139  T
Q  292 acatgaaattagaaaagtataatcctactagaaaaatctcgcaccaacataaaccacgctactgataaatggaaca 367  Q
    ||||||||| |||||| || ||||||||| ||||| ||| |||||||||||||||||  || ||||||||||||||    
T  12058138 acatgaaataagaaaa-tacaatcctactggaaaattctagcaccaacataaaccacaatagtgataaatggaaca 12058064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 12066573 - 12066363
Alignment:
Q  1 ttttccaacgtagcaaattctttataatcaacatcacattataagttacataagtattcttaaattgatatttagaaataccataattgaactgaaacaa 100  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||    
T  12066573 ttttccaacgtagcaaattctttataatcaacctcatattataagttacataagcattcttaaattgatatttagaaatatcataattgaattgaaacaa 12066474  T
Q  101 agttgaagaaaaaagttgcaaagaccataaagaacagtggtatataaaagttggctcaatttttaactgtgtgagattgttcactttttcaatatgattt 200  Q
    |||||| ||||||| | |||||||||||| ||||  || |||||||||||||| |||||||||||||| ||| ||||| ||||| ||||||||| |||||    
T  12066473 agttgaggaaaaaaatggcaaagaccatatagaatcgtagtatataaaagttgactcaatttttaactctgttagattattcac-ttttcaatacgattt 12066375  T
Q  201 cataccttctgc 212  Q
    || |||||||||    
T  12066374 caaaccttctgc 12066363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 12053644 - 12053434
Alignment:
Q  1 ttttccaacgtagcaaattctttataatcaacatcacattataagttacataagtattcttaaattgatatttagaaataccataattgaactgaaacaa 100  Q
    |||| |||| |||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||  ||||||| |||||||||||    
T  12053644 tttttcaacttagcaaattctttataatcaacctcacattatatgttacataagcattcttaaattgatatttagaaatctcataattaaactgaaacaa 12053545  T
Q  101 agttgaagaaaaaagttgcaaagaccataaagaacagtggtatataaaagttggctcaatttttaactgtgtgagattgttcactttttcaatatgattt 200  Q
     ||||| ||||||||| ||  |||  |||||||| |||   |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  12053544 ggttgaggaaaaaagtggcggaga-tataaagaatagtaccatataaaagttgactcaatttttaactgtgtgagattgtttactttttcaatatgattt 12053446  T
Q  201 cataccttctgc 212  Q
    ||||||||||||    
T  12053445 cataccttctgc 12053434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 49 - 203
Target Start/End: Complemental strand, 12063942 - 12063790
Alignment:
Q  49 cataagtattcttaaattgatatttagaaataccataattgaactgaaacaaagttgaagaaaaaagttgcaaagaccataaagaacagtggtatataaa 148  Q
    |||||| ||||||||||||||||||||||||  |||||||||| ||||||||||||||  |||||||| ||  ||| ||||||||| |||||||||||||    
T  12063942 cataagcattcttaaattgatatttagaaatctcataattgaattgaaacaaagttgagaaaaaaagtggcggagatcataaagaatagtggtatataaa 12063843  T
Q  149 agttggctcaatttttaactgtgtgagattgttcactttttcaatatgatttcat 203  Q
    |||||||||||| ||||||  | ||||||||||| |||||||||||| |||||||    
T  12063842 agttggctcaatatttaac--tatgagattgttcgctttttcaatataatttcat 12063790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 367
Target Start/End: Complemental strand, 12050855 - 12050706
Alignment:
Q  220 tgtgccttcttcaaccacttgtttggctttgcttttctgt-aaacatttactaaacannnnnnnctttactaaacatgaaattagaaaagtataatccta 318  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||       ||||||  ||||||||||| ||||| || |||||||    
T  12050855 tgtgccttctccaaccacttgtttggctttgcttttctgtaaaacattcactaaacattttttcctttacggaacatgaaattggaaaattacaatccta 12050756  T
Q  319 ctaga-aaaatctcgcaccaacataaaccacgctactgataaatggaaca 367  Q
    |  || ||||||| |||| |||||||||||||||||||| ||||||||||    
T  12050755 ccggataaaatcttgcacgaacataaaccacgctactgaaaaatggaaca 12050706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 12066231 - 12066151
Alignment:
Q  288 ctaaacatgaaattagaaaagtataatcctactagaaaaatc-tcgcaccaacataaaccacgctactgataaatggaaca 367  Q
    ||||||||||  |||||||| || ||||||| | |||||| | |||||||||||||||||||||| |||| ||||||||||    
T  12066231 ctaaacatgactttagaaaattacaatcctattggaaaaaacctcgcaccaacataaaccacgcttctgaaaaatggaaca 12066151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 12053295 - 12053216
Alignment:
Q  288 ctaaacatgaaattagaaaagtataatcctac-ta-gaaaaatctcgcaccaacataaaccacgctactgataaatggaa 365  Q
    |||||||||| ||||||||| || |||||||  || |||||||||||||||||||||||||| || ||||| ||||||||    
T  12053295 ctaaacatgacattagaaaattacaatcctatatatgaaaaatctcgcaccaacataaaccatgccactgaaaaatggaa 12053216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 30353515 - 30353724
Alignment:
Q  1 ttttccaacgtagcaaattctttataatcaacatcacattataagttacataagtattcttaaattgatatttagaaataccataa-ttgaactgaaaca 99  Q
    ||||||||||||||| |||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||||||||   | || |||||||||||||    
T  30353515 ttttccaacgtagcagattctttataatcaacctgaaattataagttacataagaattcttaaattgatatttagaaatctaaaaaattgaactgaaaca 30353614  T
Q  100 aagttgaagaaaaaagttgcaaagaccataaagaacagtggtatataaaagttggctcaatttttaactgtgtgagattgttcactttttcaatatgatt 199  Q
      ||||| || | |||| ||| ||||||||||||| |||| |||||||| ||||||||||||||||||  | || |||||||||| |||||||||| |||    
T  30353615 gggttgaggagacaagtggcagagaccataaagaatagtgatatataaaggttggctcaatttttaac--tatgggattgttcaccttttcaatataatt 30353712  T
Q  200 tcataccttctg 211  Q
    ||||||||||||    
T  30353713 tcataccttctg 30353724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 393 - 462
Target Start/End: Complemental strand, 12807057 - 12806988
Alignment:
Q  393 gctaagcttgaatggttggtttatgatgtcttttttctgcataataatcattgttttaatttccagtttt 462  Q
    ||||||||||||  |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  12807057 gctaagcttgaacagttggtttataatgtcttttttctgcatagtaatcattgttttaatttccagtttt 12806988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 393 - 462
Target Start/End: Complemental strand, 14457973 - 14457904
Alignment:
Q  393 gctaagcttgaatggttggtttatgatgtcttttttctgcataataatcattgttttaatttccagtttt 462  Q
    |||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||    
T  14457973 gctaagcttgaacggttggtttataatgtctttcttctgcatagtaatcattgttttaatttccagtttt 14457904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 393 - 462
Target Start/End: Original strand, 50291069 - 50291138
Alignment:
Q  393 gctaagcttgaatggttggtttatgatgtcttttttctgcataataatcattgttttaatttccagtttt 462  Q
    |||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||||||||| |||||||    
T  50291069 gctaagcttgaacggttggtttataatgtcttttttctgcatagtaatcatctttttaattttcagtttt 50291138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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