View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4154_high_7 (Length: 435)

Name: NF4154_high_7
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4154_high_7
NF4154_high_7
[»] chr3 (22 HSPs)
chr3 (19-421)||(53664769-53665171)
chr3 (19-51)||(44400587-44400619)
chr3 (19-50)||(38639469-38639500)
chr3 (18-48)||(517808-517838)
chr3 (19-53)||(4604048-4604082)
chr3 (19-49)||(35282960-35282990)
chr3 (18-48)||(53620161-53620191)
chr3 (18-51)||(3537077-3537110)
chr3 (19-48)||(32858701-32858730)
chr3 (19-48)||(36598124-36598153)
chr3 (19-48)||(37674310-37674339)
chr3 (18-51)||(47789625-47789658)
chr3 (22-51)||(49855985-49856014)
chr3 (19-48)||(53664426-53664455)
chr3 (18-54)||(1132752-1132788)
chr3 (18-50)||(1133105-1133137)
chr3 (20-52)||(3042942-3042974)
chr3 (19-51)||(33944809-33944841)
chr3 (18-50)||(43007344-43007376)
chr3 (18-50)||(44411970-44412002)
chr3 (18-50)||(48909052-48909084)
chr3 (18-50)||(49861069-49861101)
[»] chr5 (11 HSPs)
chr5 (18-53)||(6491081-6491116)
chr5 (20-51)||(43496376-43496407)
chr5 (18-48)||(1935243-1935273)
chr5 (18-48)||(10437858-10437888)
chr5 (18-48)||(13569261-13569291)
chr5 (19-48)||(5772548-5772577)
chr5 (18-47)||(9096195-9096224)
chr5 (18-51)||(35708932-35708965)
chr5 (19-51)||(6922090-6922122)
chr5 (20-48)||(35683291-35683319)
chr5 (18-50)||(35683652-35683684)
[»] chr1 (29 HSPs)
chr1 (18-52)||(17556536-17556570)
chr1 (18-51)||(41432950-41432983)
chr1 (18-51)||(45565362-45565395)
chr1 (19-51)||(5584384-5584416)
chr1 (18-50)||(52073627-52073659)
chr1 (19-50)||(5584744-5584775)
chr1 (20-51)||(27255078-27255109)
chr1 (20-51)||(47742405-47742436)
chr1 (18-52)||(9595794-9595828)
chr1 (18-48)||(34154507-34154537)
chr1 (18-48)||(36886742-36886772)
chr1 (17-51)||(50476760-50476794)
chr1 (19-48)||(2909021-2909050)
chr1 (22-51)||(7915392-7915421)
chr1 (18-51)||(32299336-32299369)
chr1 (18-51)||(32300288-32300321)
chr1 (24-53)||(36887108-36887137)
chr1 (21-50)||(37649798-37649827)
chr1 (19-48)||(40136449-40136478)
chr1 (18-50)||(666251-666283)
chr1 (19-51)||(2909351-2909383)
chr1 (19-51)||(34154153-34154185)
chr1 (20-48)||(36269615-36269643)
chr1 (18-50)||(39179285-39179317)
chr1 (20-52)||(40707379-40707411)
chr1 (22-54)||(43036135-43036167)
chr1 (19-51)||(48187536-48187568)
chr1 (19-51)||(49534514-49534546)
chr1 (22-50)||(50162016-50162044)
[»] chr7 (17 HSPs)
chr7 (18-51)||(4058318-4058351)
chr7 (18-51)||(16805746-16805779)
chr7 (22-54)||(33872237-33872269)
chr7 (18-48)||(38505513-38505543)
chr7 (18-51)||(15749128-15749161)
chr7 (18-51)||(30183717-30183750)
chr7 (19-48)||(38137822-38137851)
chr7 (18-51)||(42253829-42253862)
chr7 (18-51)||(42382928-42382961)
chr7 (18-50)||(7666980-7667012)
chr7 (19-51)||(34379245-34379277)
chr7 (18-54)||(36747533-36747569)
chr7 (19-51)||(37572091-37572123)
chr7 (18-50)||(38236025-38236057)
chr7 (18-50)||(41471375-41471407)
chr7 (18-50)||(46442579-46442611)
chr7 (21-53)||(46611982-46612014)
[»] chr2 (20 HSPs)
chr2 (20-53)||(16519269-16519302)
chr2 (19-51)||(1364712-1364744)
chr2 (19-51)||(5322288-5322320)
chr2 (19-51)||(11515278-11515310)
chr2 (19-51)||(39204821-39204853)
chr2 (18-53)||(36870130-36870165)
chr2 (18-48)||(11514916-11514946)
chr2 (18-48)||(16813508-16813538)
chr2 (18-48)||(16852787-16852817)
chr2 (18-48)||(43572727-43572757)
chr2 (19-48)||(1365057-1365086)
chr2 (19-52)||(31369054-31369087)
chr2 (18-51)||(32761453-32761486)
chr2 (19-48)||(34757830-34757859)
chr2 (19-52)||(39750026-39750059)
chr2 (18-50)||(13018657-13018689)
chr2 (18-50)||(14008145-14008177)
chr2 (22-54)||(16625626-16625658)
chr2 (18-46)||(16625960-16625988)
chr2 (22-54)||(18780248-18780280)
[»] scaffold0031 (1 HSPs)
scaffold0031 (19-51)||(93676-93708)
[»] chr8 (19 HSPs)
chr8 (18-54)||(79793-79829)
chr8 (19-51)||(1839999-1840031)
chr8 (18-48)||(1839638-1839668)
chr8 (20-50)||(12319123-12319153)
chr8 (18-48)||(21262754-21262784)
chr8 (18-48)||(23932736-23932766)
chr8 (19-52)||(28722880-28722913)
chr8 (19-52)||(28730522-28730555)
chr8 (18-51)||(34148395-34148428)
chr8 (22-51)||(38676396-38676425)
chr8 (16-48)||(1111303-1111335)
chr8 (18-46)||(3635655-3635683)
chr8 (19-51)||(4873397-4873429)
chr8 (18-50)||(21174036-21174068)
chr8 (19-51)||(21258800-21258832)
chr8 (20-48)||(27085220-27085248)
chr8 (24-52)||(29584413-29584441)
chr8 (19-51)||(30591772-30591804)
chr8 (18-50)||(36906422-36906454)
[»] chr6 (7 HSPs)
chr6 (18-50)||(26713733-26713765)
chr6 (18-51)||(1567150-1567183)
chr6 (18-51)||(25073429-25073462)
chr6 (18-50)||(4909696-4909728)
chr6 (18-50)||(5825565-5825597)
chr6 (19-51)||(16803035-16803067)
chr6 (18-46)||(32719554-32719582)
[»] chr4 (15 HSPs)
chr4 (18-53)||(33500387-33500422)
chr4 (18-48)||(675243-675273)
chr4 (19-53)||(40632307-40632341)
chr4 (18-48)||(52430733-52430763)
chr4 (18-48)||(52636633-52636663)
chr4 (20-53)||(21081212-21081245)
chr4 (19-52)||(44232989-44233022)
chr4 (19-51)||(12685879-12685911)
chr4 (22-50)||(12709017-12709045)
chr4 (18-50)||(27485421-27485453)
chr4 (19-51)||(28511493-28511525)
chr4 (18-46)||(35959072-35959100)
chr4 (18-50)||(38136650-38136682)
chr4 (18-46)||(38137013-38137041)
chr4 (18-50)||(42650865-42650897)
[»] scaffold0136 (1 HSPs)
scaffold0136 (18-52)||(2201-2235)
[»] scaffold0059 (1 HSPs)
scaffold0059 (21-51)||(17673-17703)
[»] scaffold0051 (2 HSPs)
scaffold0051 (18-48)||(6937-6967)
scaffold0051 (18-48)||(7920-7950)
[»] scaffold0048 (1 HSPs)
scaffold0048 (19-53)||(44373-44407)
[»] scaffold1163 (1 HSPs)
scaffold1163 (18-47)||(1931-1960)
[»] scaffold0248 (1 HSPs)
scaffold0248 (18-46)||(375-403)
[»] scaffold0087 (1 HSPs)
scaffold0087 (19-51)||(9936-9968)
[»] scaffold0063 (1 HSPs)
scaffold0063 (19-51)||(4063-4095)


Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 53664769 - 53665171
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttagtggagctcattaatcacttaaacccaattatttggttgcaaaagcttaaaattttattttacaatta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  53664769 ccttcccctccaaactcgcaaacaaagccttagtggagctcattaatcacttaaacccaattatttagttgcaaaagcttaaaattttattttacaatta 53664868  T
Q  119 aaatcaattcaactatagaatattcaaacatgtcgcggtcaacattatacctacattcagaataaagcaagaatgtgggaagcaagaatgatgaagtggt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53664869 aaatcaattcaactatagaatattcaaacatgtcgcggtcaacgttatacctacattcagaataaagcaagaatgtgggaagcaagaatgatgaagtggt 53664968  T
Q  219 gagagaatgggtttgaaggtacctagtgggaagacgatagaaatgcgcccaaagatcatcctcaaaaccgggagccataatctcaggaacattcaattcc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53664969 gagagaatgggtttgaaggtacctagtgggaagacgatagaaatgcgcccaaagatcatcctcaaaaccgggagccataatctcaggaacattcaattcc 53665068  T
Q  319 ctaagtcgactaagaactttgaggtaaacttcaatcttttgtttctgctttccattttgattccattcagaactgacaactttgatattacaacaactct 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||    
T  53665069 ctaagtcgactaagaactttgaggtaaacttcaatcttttgtttctgctttccattttgattccattcagaactgatagctttgatattgcaacaactct 53665168  T
Q  419 ctg 421  Q
    |||    
T  53665169 ctg 53665171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 44400619 - 44400587
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||||||||||||||||||    
T  44400619 ccttcccctccaaactcgcaaacaaagccttag 44400587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 38639500 - 38639469
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcctta 50  Q
    ||||||||||||||||||||||||||||||||    
T  38639500 ccttcccctccaaactcgcaaacaaagcctta 38639469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 517808 - 517838
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  517808 cccttcccctccaaactcgcaaacaaagcct 517838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 4604082 - 4604048
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttagtg 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  4604082 ccttcccctcaaaactcgcaaacaaagccttagtg 4604048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 35282990 - 35282960
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcctt 49  Q
    |||||||||||||||||||||||||||||||    
T  35282990 ccttcccctccaaactcgcaaacaaagcctt 35282960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 53620191 - 53620161
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  53620191 cccttcccctccaaactcgcaaacaaagcct 53620161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 3537110 - 3537077
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||||||||||||| |||||    
T  3537110 cccttcccctccaaactcgcaaacaaagtcttag 3537077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 32858730 - 32858701
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcct 48  Q
    ||||||||||||||||||||||||||||||    
T  32858730 ccttcccctccaaactcgcaaacaaagcct 32858701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 36598153 - 36598124
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcct 48  Q
    ||||||||||||||||||||||||||||||    
T  36598153 ccttcccctccaaactcgcaaacaaagcct 36598124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 37674310 - 37674339
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcct 48  Q
    ||||||||||||||||||||||||||||||    
T  37674310 ccttcccctccaaactcgcaaacaaagcct 37674339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 47789625 - 47789658
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||| |||||||||||||||    
T  47789625 cccttcccctccaaactcccaaacaaagccttag 47789658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 49855985 - 49856014
Alignment:
Q  22 tcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||||||||    
T  49855985 tcccctccaaactcgcaaacaaagccttag 49856014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 53664455 - 53664426
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcct 48  Q
    ||||||||||||||||||||||||||||||    
T  53664455 ccttcccctccaaactcgcaaacaaagcct 53664426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 1132788 - 1132752
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttagtgg 54  Q
    |||||||||||||||||| |||||||||||| |||||    
T  1132788 cccttcccctccaaactcccaaacaaagcctaagtgg 1132752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 1133105 - 1133137
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||| ||||||||||||||||||||||    
T  1133105 cccttcccctacaaactcgcaaacaaagcctta 1133137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 3042974 - 3042942
Alignment:
Q  20 cttcccctccaaactcgcaaacaaagccttagt 52  Q
    |||||||||||||||| ||||||||||||||||    
T  3042974 cttcccctccaaactcccaaacaaagccttagt 3042942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 33944809 - 33944841
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||||||||||||| ||||    
T  33944809 ccttcccctccaaactcgcaaacaaagctttag 33944841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 43007376 - 43007344
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  43007376 cccttcccctccaaactctcaaacaaagcctta 43007344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 44412002 - 44411970
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  44412002 cccttcccctccaaactcccaaacaaagcctta 44411970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 48909052 - 48909084
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    ||||||||||||||||| |||||||||||||||    
T  48909052 cccttcccctccaaacttgcaaacaaagcctta 48909084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 49861069 - 49861101
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  49861069 cccttcccctccaaactcccaaacaaagcctta 49861101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 6491116 - 6491081
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttagtg 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  6491116 cccttcccctccaaactcgcaaacaaagccttagtg 6491081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 43496407 - 43496376
Alignment:
Q  20 cttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||||||||||    
T  43496407 cttcccctccaaactcgcaaacaaagccttag 43496376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 1935243 - 1935273
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  1935243 cccttcccctccaaactcgcaaacaaagcct 1935273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 10437888 - 10437858
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  10437888 cccttcccctccaaactcgcaaacaaagcct 10437858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 13569291 - 13569261
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  13569291 cccttcccctccaaactcgcaaacaaagcct 13569261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 5772577 - 5772548
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcct 48  Q
    ||||||||||||||||||||||||||||||    
T  5772577 ccttcccctccaaactcgcaaacaaagcct 5772548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 9096224 - 9096195
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcc 47  Q
    ||||||||||||||||||||||||||||||    
T  9096224 cccttcccctccaaactcgcaaacaaagcc 9096195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 35708932 - 35708965
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||| |||||||||||||||    
T  35708932 cccttcccctccaaactcacaaacaaagccttag 35708965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 6922090 - 6922122
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  6922090 ccttcccctcaaaactcgcaaacaaagccttag 6922122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 35683319 - 35683291
Alignment:
Q  20 cttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||    
T  35683319 cttcccctccaaactcgcaaacaaagcct 35683291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 35683652 - 35683684
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||| ||||||||||||||||||||||    
T  35683652 cccttccccttcaaactcgcaaacaaagcctta 35683684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 17556570 - 17556536
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttagt 52  Q
    |||||||||||||||||||||||||||||||||||    
T  17556570 cccttcccctccaaactcgcaaacaaagccttagt 17556536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 41432950 - 41432983
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||||||||||||    
T  41432950 cccttcccctccaaactcgcaaacaaagccttag 41432983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 45565362 - 45565395
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||||||||||||    
T  45565362 cccttcccctccaaactcgcaaacaaagccttag 45565395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 5584416 - 5584384
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||||||||||||||||||    
T  5584416 ccttcccctccaaactcgcaaacaaagccttag 5584384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 52073627 - 52073659
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||||||||||||||||||    
T  52073627 cccttcccctccaaactcgcaaacaaagcctta 52073659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 5584744 - 5584775
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcctta 50  Q
    ||||||||||||||||||||||||||||||||    
T  5584744 ccttcccctccaaactcgcaaacaaagcctta 5584775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 27255109 - 27255078
Alignment:
Q  20 cttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||||||||||    
T  27255109 cttcccctccaaactcgcaaacaaagccttag 27255078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 47742436 - 47742405
Alignment:
Q  20 cttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||||||||||    
T  47742436 cttcccctccaaactcgcaaacaaagccttag 47742405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 9595794 - 9595828
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttagt 52  Q
    |||||||||||||||||| ||||||||||||||||    
T  9595794 cccttcccctccaaactcccaaacaaagccttagt 9595828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 34154507 - 34154537
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  34154507 cccttcccctccaaactcgcaaacaaagcct 34154537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 36886772 - 36886742
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  36886772 cccttcccctccaaactcgcaaacaaagcct 36886742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 50476760 - 50476794
Alignment:
Q  17 acccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||| |||||||||||||||    
T  50476760 acccttcccctccaaactcccaaacaaagccttag 50476794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 2909050 - 2909021
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcct 48  Q
    ||||||||||||||||||||||||||||||    
T  2909050 ccttcccctccaaactcgcaaacaaagcct 2909021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 7915421 - 7915392
Alignment:
Q  22 tcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||||||||    
T  7915421 tcccctccaaactcgcaaacaaagccttag 7915392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 32299336 - 32299369
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||| |||||||||||||||    
T  32299336 cccttcccctccaaactcccaaacaaagccttag 32299369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 32300288 - 32300321
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||| |||||||||||||||    
T  32300288 cccttcccctccaaactcccaaacaaagccttag 32300321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 36887108 - 36887137
Alignment:
Q  24 ccctccaaactcgcaaacaaagccttagtg 53  Q
    ||||||||||||||||||||||||||||||    
T  36887108 ccctccaaactcgcaaacaaagccttagtg 36887137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 37649798 - 37649827
Alignment:
Q  21 ttcccctccaaactcgcaaacaaagcctta 50  Q
    ||||||||||||||||||||||||||||||    
T  37649798 ttcccctccaaactcgcaaacaaagcctta 37649827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 40136449 - 40136478
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcct 48  Q
    ||||||||||||||||||||||||||||||    
T  40136449 ccttcccctccaaactcgcaaacaaagcct 40136478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 666283 - 666251
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  666283 cccttcccctccaaactcacaaacaaagcctta 666251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 2909351 - 2909383
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||| |||||||||||||||    
T  2909351 ccttcccctccaaactcccaaacaaagccttag 2909383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 34154185 - 34154153
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||| |||||||||||||||    
T  34154185 ccttcccctccaaactcccaaacaaagccttag 34154153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 36269643 - 36269615
Alignment:
Q  20 cttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||    
T  36269643 cttcccctccaaactcgcaaacaaagcct 36269615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 39179285 - 39179317
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  39179285 cccttcccctccaaactcccaaacaaagcctta 39179317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 40707379 - 40707411
Alignment:
Q  20 cttcccctccaaactcgcaaacaaagccttagt 52  Q
    |||||||||||||||| ||||||||||||||||    
T  40707379 cttcccctccaaactcccaaacaaagccttagt 40707411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 43036167 - 43036135
Alignment:
Q  22 tcccctccaaactcgcaaacaaagccttagtgg 54  Q
    |||||||||||||| ||||||||||||||||||    
T  43036167 tcccctccaaactcccaaacaaagccttagtgg 43036135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 48187536 - 48187568
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  48187536 ccttcccctcaaaactcgcaaacaaagccttag 48187568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 49534546 - 49534514
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  49534546 ccttcccctcaaaactcgcaaacaaagccttag 49534514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 50162044 - 50162016
Alignment:
Q  22 tcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||||||||||||||    
T  50162044 tcccctccaaactcgcaaacaaagcctta 50162016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 4058318 - 4058351
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||||||||||||    
T  4058318 cccttcccctccaaactcgcaaacaaagccttag 4058351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 16805746 - 16805779
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||||||||||||    
T  16805746 cccttcccctccaaactcgcaaacaaagccttag 16805779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 33872237 - 33872269
Alignment:
Q  22 tcccctccaaactcgcaaacaaagccttagtgg 54  Q
    |||||||||||||||||||||||||||||||||    
T  33872237 tcccctccaaactcgcaaacaaagccttagtgg 33872269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 38505513 - 38505543
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  38505513 cccttcccctccaaactcgcaaacaaagcct 38505543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 15749128 - 15749161
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||||| ||||||    
T  15749128 cccttcccctccaaactcgcaaacaaaaccttag 15749161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 30183750 - 30183717
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||| ||||||||||||||||||||||    
T  30183750 cccttcccctctaaactcgcaaacaaagccttag 30183717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 38137851 - 38137822
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcct 48  Q
    ||||||||||||||||||||||||||||||    
T  38137851 ccttcccctccaaactcgcaaacaaagcct 38137822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 42253862 - 42253829
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||| ||||||||||||||||||    
T  42253862 cccttcccctccaaattcgcaaacaaagccttag 42253829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 42382928 - 42382961
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||| ||||||||    
T  42382928 cccttcccctccaaactcgcaaacagagccttag 42382961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 7667012 - 7666980
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  7667012 cccttcccctccaaactcccaaacaaagcctta 7666980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 34379277 - 34379245
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  34379277 ccttcccctcaaaactcgcaaacaaagccttag 34379245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 36747533 - 36747569
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttagtgg 54  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  36747533 cccttcccctccaaactctcaaacaaagacttagtgg 36747569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 37572091 - 37572123
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  37572091 ccttcccctcaaaactcgcaaacaaagccttag 37572123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 38236025 - 38236057
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  38236025 cccttcccctccaaactcccaaacaaagcctta 38236057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 41471407 - 41471375
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||| ||||||||||||||||||||||||||    
T  41471407 cccttctcctccaaactcgcaaacaaagcctta 41471375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 46442611 - 46442579
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||||||| ||||||||||    
T  46442611 cccttcccctccaaactcgcaaccaaagcctta 46442579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 46611982 - 46612014
Alignment:
Q  21 ttcccctccaaactcgcaaacaaagccttagtg 53  Q
    |||||||||||||||||||||||||||| ||||    
T  46611982 ttcccctccaaactcgcaaacaaagcctaagtg 46612014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 16519269 - 16519302
Alignment:
Q  20 cttcccctccaaactcgcaaacaaagccttagtg 53  Q
    ||||||||||||||||||||||||||||||||||    
T  16519269 cttcccctccaaactcgcaaacaaagccttagtg 16519302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 1364744 - 1364712
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||||||||||||||||||    
T  1364744 ccttcccctccaaactcgcaaacaaagccttag 1364712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 5322288 - 5322320
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||||||||||||||||||    
T  5322288 ccttcccctccaaactcgcaaacaaagccttag 5322320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 11515278 - 11515310
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||||||||||||||||||    
T  11515278 ccttcccctccaaactcgcaaacaaagccttag 11515310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 39204853 - 39204821
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||||||||||||||||||    
T  39204853 ccttcccctccaaactcgcaaacaaagccttag 39204821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 36870165 - 36870130
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttagtg 53  Q
    |||||||||| |||||||||||||||||||||||||    
T  36870165 cccttccccttcaaactcgcaaacaaagccttagtg 36870130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 11514946 - 11514916
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  11514946 cccttcccctccaaactcgcaaacaaagcct 11514916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 16813538 - 16813508
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  16813538 cccttcccctccaaactcgcaaacaaagcct 16813508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 16852817 - 16852787
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  16852817 cccttcccctccaaactcgcaaacaaagcct 16852787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 43572727 - 43572757
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  43572727 cccttcccctccaaactcgcaaacaaagcct 43572757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 1365057 - 1365086
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcct 48  Q
    ||||||||||||||||||||||||||||||    
T  1365057 ccttcccctccaaactcgcaaacaaagcct 1365086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 31369054 - 31369087
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttagt 52  Q
    |||||||||| |||||||||||||||||||||||    
T  31369054 ccttcccctcaaaactcgcaaacaaagccttagt 31369087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 32761453 - 32761486
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||||||| |||||||||||    
T  32761453 cccttcccctccaaactcgcaatcaaagccttag 32761486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 34757830 - 34757859
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagcct 48  Q
    ||||||||||||||||||||||||||||||    
T  34757830 ccttcccctccaaactcgcaaacaaagcct 34757859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 39750059 - 39750026
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttagt 52  Q
    |||||||||||||||||||||| |||||||||||    
T  39750059 ccttcccctccaaactcgcaaagaaagccttagt 39750026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 13018657 - 13018689
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||| ||||||||||||||||||||||||    
T  13018657 cccttcccttccaaactcgcaaacaaagcctta 13018689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 14008177 - 14008145
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  14008177 cccttcccctccaaactcccaaacaaagcctta 14008145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 16625658 - 16625626
Alignment:
Q  22 tcccctccaaactcgcaaacaaagccttagtgg 54  Q
    |||||||||||||| ||||||||||||||||||    
T  16625658 tcccctccaaactcccaaacaaagccttagtgg 16625626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 16625960 - 16625988
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagc 46  Q
    |||||||||||||||||||||||||||||    
T  16625960 cccttcccctccaaactcgcaaacaaagc 16625988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 18780280 - 18780248
Alignment:
Q  22 tcccctccaaactcgcaaacaaagccttagtgg 54  Q
    |||||||||||||| ||||||||||||||||||    
T  18780280 tcccctccaaactcccaaacaaagccttagtgg 18780248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 93676 - 93708
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||||||||||||||||||    
T  93676 ccttcccctccaaactcgcaaacaaagccttag 93708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 79793 - 79829
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttagtgg 54  Q
    |||||||||||||||||||||||||||||||| ||||    
T  79793 cccttcccctccaaactcgcaaacaaagccttggtgg 79829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 1839999 - 1840031
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||||||||||||||||||    
T  1839999 ccttcccctccaaactcgcaaacaaagccttag 1840031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 1839668 - 1839638
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  1839668 cccttcccctccaaactcgcaaacaaagcct 1839638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 12319123 - 12319153
Alignment:
Q  20 cttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||||||||||||||||    
T  12319123 cttcccctccaaactcgcaaacaaagcctta 12319153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 21262754 - 21262784
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  21262754 cccttcccctccaaactcgcaaacaaagcct 21262784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 23932736 - 23932766
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  23932736 cccttcccctccaaactcgcaaacaaagcct 23932766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 28722880 - 28722913
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttagt 52  Q
    |||||||||| |||||||||||||||||||||||    
T  28722880 ccttcccctcaaaactcgcaaacaaagccttagt 28722913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 28730522 - 28730555
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttagt 52  Q
    |||||||||| |||||||||||||||||||||||    
T  28730522 ccttcccctcaaaactcgcaaacaaagccttagt 28730555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 34148428 - 34148395
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||| |||||||||||||||    
T  34148428 cccttcccctccaaactcccaaacaaagccttag 34148395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 38676396 - 38676425
Alignment:
Q  22 tcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||||||||    
T  38676396 tcccctccaaactcgcaaacaaagccttag 38676425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 1111303 - 1111335
Alignment:
Q  16 cacccttcccctccaaactcgcaaacaaagcct 48  Q
    ||||||| |||||||||||||||||||||||||    
T  1111303 caccctttccctccaaactcgcaaacaaagcct 1111335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 3635655 - 3635683
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagc 46  Q
    |||||||||||||||||||||||||||||    
T  3635655 cccttcccctccaaactcgcaaacaaagc 3635683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 4873397 - 4873429
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||| |||||||||||||||    
T  4873397 ccttcccctccaaactcacaaacaaagccttag 4873429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 21174036 - 21174068
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    ||||||| |||||||||||||||||||||||||    
T  21174036 cccttccactccaaactcgcaaacaaagcctta 21174068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 21258832 - 21258800
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  21258832 ccttcccctcaaaactcgcaaacaaagccttag 21258800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 27085248 - 27085220
Alignment:
Q  20 cttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||    
T  27085248 cttcccctccaaactcgcaaacaaagcct 27085220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 29584413 - 29584441
Alignment:
Q  24 ccctccaaactcgcaaacaaagccttagt 52  Q
    |||||||||||||||||||||||||||||    
T  29584413 ccctccaaactcgcaaacaaagccttagt 29584441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 30591804 - 30591772
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  30591804 ccttcccctcaaaactcgcaaacaaagccttag 30591772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 36906422 - 36906454
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  36906422 cccttcccctccaaactcccaaacaaagcctta 36906454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 26713765 - 26713733
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||||||||||||||||||    
T  26713765 cccttcccctccaaactcgcaaacaaagcctta 26713733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 1567183 - 1567150
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||||||||||||| ||||||    
T  1567183 cccttcccctccaaactcgcaaacaaaaccttag 1567150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 25073429 - 25073462
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttag 51  Q
    ||||||||||||||||| ||||||||||||||||    
T  25073429 cccttcccctccaaacttgcaaacaaagccttag 25073462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 4909728 - 4909696
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  4909728 cccttcccctccaaactcccaaacaaagcctta 4909696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 5825565 - 5825597
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  5825565 cccttcccctccaaactcccaaacaaagcctta 5825597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 16803035 - 16803067
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  16803035 ccttcccctcaaaactcgcaaacaaagccttag 16803067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 32719554 - 32719582
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagc 46  Q
    |||||||||||||||||||||||||||||    
T  32719554 cccttcccctccaaactcgcaaacaaagc 32719582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 33500422 - 33500387
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttagtg 53  Q
    |||||||| |||||||||||||||||||||||||||    
T  33500422 cccttcccttccaaactcgcaaacaaagccttagtg 33500387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 675273 - 675243
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  675273 cccttcccctccaaactcgcaaacaaagcct 675243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 40632307 - 40632341
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttagtg 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  40632307 ccttcccctcaaaactcgcaaacaaagccttagtg 40632341  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 52430733 - 52430763
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  52430733 cccttcccctccaaactcgcaaacaaagcct 52430763  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 52636663 - 52636633
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  52636663 cccttcccctccaaactcgcaaacaaagcct 52636633  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 21081245 - 21081212
Alignment:
Q  20 cttcccctccaaactcgcaaacaaagccttagtg 53  Q
    ||||||||||||||||||||||||||||| ||||    
T  21081245 cttcccctccaaactcgcaaacaaagcctaagtg 21081212  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 44233022 - 44232989
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttagt 52  Q
    |||||||||| |||||||||||||||||||||||    
T  44233022 ccttcccctcaaaactcgcaaacaaagccttagt 44232989  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 12685911 - 12685879
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  12685911 ccttcccctcaaaactcgcaaacaaagccttag 12685879  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 12709017 - 12709045
Alignment:
Q  22 tcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||||||||||||||    
T  12709017 tcccctccaaactcgcaaacaaagcctta 12709045  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 27485421 - 27485453
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    ||||||| |||||||||||||||||||||||||    
T  27485421 cccttccactccaaactcgcaaacaaagcctta 27485453  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 28511525 - 28511493
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  28511525 ccttcccctcaaaactcgcaaacaaagccttag 28511493  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 35959100 - 35959072
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagc 46  Q
    |||||||||||||||||||||||||||||    
T  35959100 cccttcccctccaaactcgcaaacaaagc 35959072  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 38136682 - 38136650
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  38136682 cccttcccctccaaactcccaaacaaagcctta 38136650  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 38137013 - 38137041
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagc 46  Q
    |||||||||||||||||||||||||||||    
T  38137013 cccttcccctccaaactcgcaaacaaagc 38137041  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 42650865 - 42650897
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcctta 50  Q
    |||||||||||||||||| ||||||||||||||    
T  42650865 cccttcccctccaaactcacaaacaaagcctta 42650897  T

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Target: scaffold0136 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 2201 - 2235
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagccttagt 52  Q
    ||||||||||||||||| |||||||||||||||||    
T  2201 cccttcccctccaaacttgcaaacaaagccttagt 2235  T

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Target: scaffold0059 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 17673 - 17703
Alignment:
Q  21 ttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||||||||||||||||||||||||    
T  17673 ttcccctccaaactcgcaaacaaagccttag 17703  T

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Target: scaffold0051 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 6937 - 6967
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  6937 cccttcccctccaaactcgcaaacaaagcct 6967  T

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Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 7920 - 7950
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcct 48  Q
    |||||||||||||||||||||||||||||||    
T  7920 cccttcccctccaaactcgcaaacaaagcct 7950  T

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Target: scaffold0048 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 44407 - 44373
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttagtg 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  44407 ccttcccctcaaaactcgcaaacaaagccttagtg 44373  T

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Target: scaffold1163 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 1960 - 1931
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagcc 47  Q
    ||||||||||||||||||||||||||||||    
T  1960 cccttcccctccaaactcgcaaacaaagcc 1931  T

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Target: scaffold0248 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 375 - 403
Alignment:
Q  18 cccttcccctccaaactcgcaaacaaagc 46  Q
    |||||||||||||||||||||||||||||    
T  375 cccttcccctccaaactcgcaaacaaagc 403  T

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Target: scaffold0087 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 9936 - 9968
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  9936 ccttcccctcaaaactcgcaaacaaagccttag 9968  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 4063 - 4095
Alignment:
Q  19 ccttcccctccaaactcgcaaacaaagccttag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  4063 ccttcccctcaaaactcgcaaacaaagccttag 4095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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