View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4154_high_9 (Length: 429)

Name: NF4154_high_9
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4154_high_9
NF4154_high_9
[»] chr7 (3 HSPs)
chr7 (136-407)||(29868055-29868326)
chr7 (136-404)||(626582-626850)
chr7 (42-132)||(16179758-16179849)
[»] chr1 (2 HSPs)
chr1 (136-407)||(20786023-20786294)
chr1 (136-404)||(29469770-29470038)
[»] chr8 (3 HSPs)
chr8 (136-407)||(19965521-19965792)
chr8 (136-407)||(21027204-21027475)
chr8 (267-401)||(6367793-6367927)
[»] chr3 (1 HSPs)
chr3 (140-407)||(33721527-33721794)
[»] chr5 (1 HSPs)
chr5 (140-407)||(28698741-28699008)
[»] scaffold0009 (1 HSPs)
scaffold0009 (82-132)||(169254-169304)
[»] scaffold0031 (1 HSPs)
scaffold0031 (16-45)||(93272-93301)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 136 - 407
Target Start/End: Complemental strand, 29868326 - 29868055
Alignment:
Q  136 ggacagtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatacta 235  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  29868326 ggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactc 29868227  T
Q  236 tttgattgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaatt 335  Q
    ||| |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||    
T  29868226 tttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagcgcttgcattcccctaattctttcatctccttcatattcagtt 29868127  T
Q  336 ttgaggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagacagca 407  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  29868126 ttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacagca 29868055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 136 - 404
Target Start/End: Complemental strand, 626850 - 626582
Alignment:
Q  136 ggacagtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatacta 235  Q
    |||||||||  ||||||||||||  ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  626850 ggacagtcacaagtattttctgacctattcttgaatcagataattcagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactc 626751  T
Q  236 tttgattgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaatt 335  Q
    ||| |||| |||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||| | |||||||||||||| ||||||||||||||||    
T  626750 tttaattgtttcagactccttcatcttttgcatctcaaattctccaatcaaattaagtgcttgcatccccctaattctttcatctccttcatattcaatt 626651  T
Q  336 ttgaggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagaca 404  Q
    |||| || ||||||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||||    
T  626650 ttgaagatattccatatttcaaatgctgatttgatgatcataattctggtgaagatttcttctgagaca 626582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 16179849 - 16179758
Alignment:
Q  42 tttcaatttctagca-attcatagttcccattcgaatttctttcacattcagaattcgaatttcttccccatgtaagtattttgttgcctcc 132  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  16179849 tttcaatttcttgcagattcatagttcccattcgaatttctttcatattcagaattcaaatttcttccccaggtaagtatttttctgcctcc 16179758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 136 - 407
Target Start/End: Original strand, 20786023 - 20786294
Alignment:
Q  136 ggacagtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatacta 235  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  20786023 ggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactc 20786122  T
Q  236 tttgattgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaatt 335  Q
    ||| |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||    
T  20786123 tttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagcgcttgcattcccctaattctttcatctccttcatattcagtt 20786222  T
Q  336 ttgaggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagacagca 407  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  20786223 ttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacagca 20786294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 136 - 404
Target Start/End: Complemental strand, 29470038 - 29469770
Alignment:
Q  136 ggacagtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatacta 235  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||     
T  29470038 ggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaatgttaataagtttatttgcatactc 29469939  T
Q  236 tttgattgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaatt 335  Q
    ||| |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||    
T  29469938 tttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagcgcttgcattcccctaattctttcatctccttcatattcagtt 29469839  T
Q  336 ttgaggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagaca 404  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  29469838 ttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagaca 29469770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 136 - 407
Target Start/End: Complemental strand, 19965792 - 19965521
Alignment:
Q  136 ggacagtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatacta 235  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  19965792 ggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactc 19965693  T
Q  236 tttgattgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaatt 335  Q
    ||| |||| |||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||    
T  19965692 tttaattgtttcagactccttcatcttttgcatctcaaattctctaatcaaattaagcgcttgcattcccctaattctttcatctccttcatattcagtt 19965593  T
Q  336 ttgaggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagacagca 407  Q
    || |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  19965592 ttaaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacagca 19965521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 136 - 407
Target Start/End: Original strand, 21027204 - 21027475
Alignment:
Q  136 ggacagtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatacta 235  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  21027204 ggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaatgctaataagtttatttgcatactc 21027303  T
Q  236 tttgattgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaatt 335  Q
    ||| |||| |||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||    
T  21027304 tttaattgtttcagactccttcatcttttgcatctcaaattctcaaatcaaattaagcgcttgcattcccctaattctttcatctccttcatattcagtt 21027403  T
Q  336 ttgaggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagacagca 407  Q
    || |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  21027404 ttaaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacagca 21027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 267 - 401
Target Start/End: Original strand, 6367793 - 6367927
Alignment:
Q  267 atctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaattttgaggaaattccatatttcaaatgttgatt 366  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||||||| ||||||||||||| || ||    
T  6367793 atctcaaattctcgaatgaaattaagcgcttgcattcccctaattctttcatctccttcgtattcagttttgaggaaatttcatatttcaaatgctggtt 6367892  T
Q  367 tgatggtcataattttggttaagatttcttctgag 401  Q
    |||||||||||||||||||||||||||||||||||    
T  6367893 tgatggtcataattttggttaagatttcttctgag 6367927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 140 - 407
Target Start/End: Original strand, 33721527 - 33721794
Alignment:
Q  140 agtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatactatttg 239  Q
    ||||| |||||||||||||| ||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||     
T  33721527 agtcacgagtattttctgaactattcttgaatcagataattcagaaccatgcaatcttactttgttagcaatgctaataagtttatttgcatactcttta 33721626  T
Q  240 attgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaattttga 339  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||||| ||||||    
T  33721627 attgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaattctttcatctccttcatattcagttttga 33721726  T
Q  340 ggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagacagca 407  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  33721727 ggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacagca 33721794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 140 - 407
Target Start/End: Original strand, 28698741 - 28699008
Alignment:
Q  140 agtcaagagtattttctgaaatattcttaaatcagacaattcagaaccaagcaatcttactttgtttgcaatgctaataagtttatttgcatactatttg 239  Q
    ||||| |||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||     
T  28698741 agtcacgagtattttctgaactattcttgaatcagataattcagaaccaaacaatcttactttgttagcaatgctaataagtttatttgcatactcttta 28698840  T
Q  240 attgattcagactccgtcatcttttgtatctcaaattctcgaatcaaattaagcgcttgcattctcctaattctttcatttccttcatattcaattttga 339  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||||| | |||||| | |||||||||||||| ||||||||||||| ||||||    
T  28698841 attgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgtttgcatccccctaattctttcatctccttcatattcagttttga 28698940  T
Q  340 ggaaattccatatttcaaatgttgatttgatggtcataattttggttaagatttcttctgagacagca 407  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||    
T  28698941 ggaaattccatatttcaaatgctgatttgatggttataattatggtgaagatttcttctgagacagca 28699008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 169254 - 169304
Alignment:
Q  82 ttcacattcagaattcgaatttcttccccatgtaagtattttgttgcctcc 132  Q
    |||||||||||||||| ||||||||||||| |||||||||||  |||||||    
T  169254 ttcacattcagaattcaaatttcttccccaggtaagtattttcctgcctcc 169304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 93301 - 93272
Alignment:
Q  16 atcattagccttcaaatctctttcaatttc 45  Q
    ||||||||||||||||||||||||||||||    
T  93301 atcattagccttcaaatctctttcaatttc 93272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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