View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4154_low_1 (Length: 730)

Name: NF4154_low_1
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4154_low_1
NF4154_low_1
[»] chr5 (17 HSPs)
chr5 (23-515)||(10212821-10213338)
chr5 (512-716)||(10210508-10210712)
chr5 (512-716)||(10108453-10108654)
chr5 (16-235)||(9677191-9677410)
chr5 (27-226)||(12105294-12105493)
chr5 (228-512)||(10105150-10105454)
chr5 (531-716)||(10216301-10216476)
chr5 (23-183)||(9683918-9684077)
chr5 (16-117)||(9675702-9675803)
chr5 (182-328)||(9675522-9675660)
chr5 (82-184)||(10211009-10211111)
chr5 (419-512)||(9675292-9675385)
chr5 (352-409)||(9683324-9683380)
chr5 (349-405)||(9675430-9675486)
chr5 (514-586)||(9683423-9683495)
chr5 (240-326)||(9683423-9683509)
chr5 (244-326)||(10210638-10210720)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 23 - 515
Target Start/End: Complemental strand, 10213338 - 10212821
Alignment:
Q  23 ttaatatttttcaaaagatagttatctttgttctttccggtttccgagtgcac--------cgggggctttactttatcctatttatggtgaaggagaac 114  Q
    ||||||||||| |||||||| |||||||||| |||| ||| || |||||||||        |||||||||| ||||||||||| ||||||||||||||||    
T  10213338 ttaatatttttaaaaagatacttatctttgtccttttcgggttgcgagtgcactgggtgaccgggggctttgctttatcctatctatggtgaaggagaac 10213239  T
Q  115 taacacaagccttttgttgtagtgcttctgtcaaaggttgcatttatttaagttttaaagg-atttatgaggccgtttcttaaaatttctaaatacctta 213  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| || |    
T  10213238 taacacaagccttttgtcgccgtgcttctgtcaaaggttgcatttatttaagttttaaagggatttaggcggccgtttcttaaaatttctaaatatctaa 10213139  T
Q  214 atttcattctcttgaaatattgcaaattgttgttttgtcgaacttatatgcttatttacgtcttaaacttttgcgaatccggttcgctgaatgctggtta 313  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||||||| |||||||| ||||||| ||||  ||||| ||||||  ||||||  ||||    
T  10213138 atttcattctctttaaatattgcaaattgttgttttgttaaacttatatgtttatttacatcttaaaattttctgaatcaggttcgtcgaatgcctgtta 10213039  T
Q  314 tttctctgcttatgg------------------tctttgatatgtttatactaatataatatttttgagaagaaatgaggttgaaaatcccccaagtgca 395  Q
    |||||||||||||||                  |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  10213038 tttctctgcttatggataaggtacataaatcattcttagatatgtttatactaatataatatttttgagaagagatgaggttgaatatcccccaagtgca 10212939  T
Q  396 aagcaatttcatc--tgtcatatgcaaacgaatgttgcaggtgactgagttgtataaaggtgtcagatcagcttatcctagatccatcatttgtaatacc 493  Q
    |||||||||||||  |||||| |  |||||||||||||||||||||||||||  ||||||||| ||||||||||||    |||||||| |||||||| ||    
T  10212938 aagcaatttcatctttgtcatttttaaacgaatgttgcaggtgactgagttgcgtaaaggtgttagatcagcttat----gatccatcctttgtaattcc 10212843  T
Q  494 atcaacacaatctttgtctaaa 515  Q
    ||||||||||||||||| ||||    
T  10212842 atcaacacaatctttgtttaaa 10212821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 512 - 716
Target Start/End: Complemental strand, 10210712 - 10210508
Alignment:
Q  512 taaacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattcca 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10210712 taaacatatgtgcttatacacatcttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattcca 10210613  T
Q  612 ccatcgccgaccgatgccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaaggga 711  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10210612 ccatcgccgaccgatgccgtctttgtctcctaaagatatatccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaaggga 10210513  T
Q  712 atatg 716  Q
    |||||    
T  10210512 atatg 10210508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 512 - 716
Target Start/End: Original strand, 10108453 - 10108654
Alignment:
Q  512 taaacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattcca 611  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10108453 taaacataagtgcttatacacatcttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttttcctgaacccattcttcacgattcca 10108552  T
Q  612 ccatcgccgaccgatgccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatatt-aaaggaatggtggctaaggg 710  Q
    |||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10108553 ccatcgccgaca----ccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaaggaatggtggctaaggg 10108648  T
Q  711 aatatg 716  Q
    ||||||    
T  10108649 aatatg 10108654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 9677410 - 9677191
Alignment:
Q  16 attatggttaatatttttcaaaagatagttatctttgttctttccggtttccgagtgcaccgggggctttactttatcctatttatggtgaaggagaact 115  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||     
T  9677410 attatggttaatgtttttcaaaagatacttatctttgtcctttccggtttccgaatgcaccaggggctttgctttatcctatttatggtgaaggagaacc 9677311  T
Q  116 aacacaagccttttgttgtagtgcttctgtcaaaggttgcatttatttaagttttaaaggatttatgaggccgtttcttaaaatttctaaataccttaat 215  Q
    ||||||||| || ||  ||  | || |||||||||||  ||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  9677310 aacacaagctttctgccgtcatactgctgtcaaaggtcacatttatgtaagttttaaaggatttatgaggctgtttcttaaaatttataaataccttaat 9677211  T
Q  216 ttcattctcttgaaatattg 235  Q
    |||| |||||| ||||||||    
T  9677210 ttcactctctttaaatattg 9677191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 12105493 - 12105294
Alignment:
Q  27 tatttttcaaaagatagttatctttgttctttccggtttccgagtgcaccgggggctttactttatcctatttatggtgaaggagaactaacacaagcct 126  Q
    |||||||||||||||| ||| |||||| ||||||||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||| | ||||||    
T  12105493 tatttttcaaaagataattaactttgtcctttccggtttccgaatgcaccaggggctttgctttatcctacttatggtgaaggagaactaaaagaagcct 12105394  T
Q  127 tttgttgtagtgcttctgtcaaaggttgcatttatttaagttttaaaggatttatgaggccgtttcttaaaatttctaaataccttaatttcattctctt 226  Q
    ||||| || || || |||||| |||| |||||||| || ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  12105393 tttgtcgttgtactgctgtcataggtcgcatttatgtatgttttaaaggatttatgaggctgtttcttaaaatttctaaatatcttaatttcattctctt 12105294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 228 - 512
Target Start/End: Original strand, 10105150 - 10105454
Alignment:
Q  228 aaatattgcaaattgttgttttgtcgaacttatatgcttatttacgtcttaaacttttgcgaatccggttcgctgaatgctggttatttctctgcttatg 327  Q
    |||||||||||||||||||||||| |||| | ||||||||| ||| ||||||| ||||| ||||| |||||||  |||||  ||||||||||||||||||    
T  10105150 aaatattgcaaattgttgttttgttgaacatgtatgcttatgtacatcttaaaattttgtgaatcaggttcgccaaatgcctgttatttctctgcttatg 10105249  T
Q  328 g-------------------tctttgatatgtttatactaatataatatttttgagaagaaatgaggttgaaaatcccccaagtgcaaagcaatttcatc 408  Q
    |                   ||||  ||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  10105250 gatgagtgtacagaaataattcttacatatgtttagactaatataatatttttgagaagagatgaggttgaatatcccgcaagtgcaaagcaatttcatc 10105349  T
Q  409 --tgtcatatgcaaacgaatgttgcaggtgactgagttgtataaaggtgtcagatcagcttatcctagatccatcatttgtaataccatcaacacaatct 506  Q
      |||||| |  ||| |||||||||||||||||||||||| || ||||||||||||||||||| || ||||| || || |||||||||||||||||||||    
T  10105350 tttgtcatttttaaatgaatgttgcaggtgactgagttgtgtacaggtgtcagatcagcttat-ctggatccttccttcgtaataccatcaacacaatct 10105448  T
Q  507 ttgtct 512  Q
    ||||||    
T  10105449 ttgtct 10105454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 531 - 716
Target Start/End: Complemental strand, 10216476 - 10216301
Alignment:
Q  531 acatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattccaccatcgccgaccgatgccg 630  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| |||||| |||| | ||||           ||     
T  10216476 acatcttaaacttttgtgaattaggttctcagaatgcctgttatttatctgcttatcctgaacccatccttcaccattctatcatc----------acca 10216387  T
Q  631 tctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaagggaatatg 716  Q
    |||||||||||||| ||| |||||||||||| | || |||||||||||| || |||||||||||||||||||||||||||||||||    
T  10216386 tctttgtctcctaatgatttttccagtgaaatgttgaagatgttgagtctgaaagatattaaaggaatggtggctaagggaatatg 10216301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 9684077 - 9683918
Alignment:
Q  23 ttaatatttttcaaaagatagttatctttgttctttccggtttccgagtgcaccgggggctttactttatcctatttatggtgaaggagaactaacacaa 122  Q
    ||||||||||||||  |||| ||||||||||| |||| ||| ||| | ||| ||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  9684077 ttaatatttttcaactgatacttatctttgttttttcaggtatcccaatgccccgggggctttgctttatcctatttatggtgaaggggaactaccacaa 9683978  T
Q  123 gccttttgttgtagtgcttctgtcaaaggttgcatttatttaagttttaaaggatttatga 183  Q
    || |||||| || ||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  9683977 gctttttgtcgtcgtgctgctgtcaaaggttgcatttatgtaag-tttaaaggatttatga 9683918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 9675803 - 9675702
Alignment:
Q  16 attatggttaatatttttcaaaagatagttatctttgttctttccggtttccgagtgcaccgggggctttactttatcctatttatggtgaaggagaact 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||||| ||||  ||||||||| ||||||||||||||||||    
T  9675803 attatggttaatatttttcaaaagatacttatctttgttctttcagatttccgaatgcaccggggactttgatttatcctacttatggtgaaggagaact 9675704  T
Q  116 aa 117  Q
    ||    
T  9675703 aa 9675702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 182 - 328
Target Start/End: Complemental strand, 9675660 - 9675522
Alignment:
Q  182 gaggccgtttcttaaaatttctaaataccttaatttcattctcttgaaatattgcaaattgttgttttgtcgaacttatatgcttatttacgtcttaaac 281  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||  ||||||||| |||||||        ||||||||||||||||||| ||||||||    
T  9675660 gaggccttttctttaaatttccaaataccttaatttcattctcttttaatattgcatattgttg--------aacttatatgcttatttacatcttaaac 9675569  T
Q  282 ttttgcgaatccggttcgctgaatgctggttatttctctgcttatgg 328  Q
    ||||| ||||| ||||||  |||||| |||||| |||||||||||||    
T  9675568 ttttgtgaatcaggttcgacgaatgccggttatatctctgcttatgg 9675522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 10211111 - 10211009
Alignment:
Q  82 ctttactttatcctatttatggtgaaggagaactaacacaagccttttgttgtagtgcttctgtcaaaggttgcatttatttaagttttaaaggatttat 181  Q
    ||||||||| ||||||||||||||||||| |||||  |||||| |||||| || ||||| || ||||||||||||||||| ||||||||| |||||||||    
T  10211111 ctttactttgtcctatttatggtgaaggaaaactacgacaagctttttgtcgtcgtgctgctatcaaaggttgcatttatgtaagttttataggatttat 10211012  T
Q  182 gag 184  Q
    |||    
T  10211011 gag 10211009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 419 - 512
Target Start/End: Complemental strand, 9675385 - 9675292
Alignment:
Q  419 aaacgaatgttgcaggtgactgagttgtataaaggtgtcagatcagcttatcctagatccatcatttgtaataccatcaacacaatctttgtct 512  Q
    |||| ||||| |||| | ||||||| |||| ||||||| ||||||| ||||||| |||||||| |||||||| ||||||||||| | |||||||    
T  9675385 aaactaatgtcgcagatcactgagtcgtatgaaggtgttagatcagtttatcctggatccatcctttgtaattccatcaacacagtgtttgtct 9675292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 9683380 - 9683324
Alignment:
Q  352 taatatttttgagaagaaatgaggttgaaaatcccccaagtgcaaagcaatttcatct 409  Q
    |||||||||||| |||| | ||||||||| |||||| |||||||||||||||||||||    
T  9683380 taatatttttgataagagacgaggttgaatatcccc-aagtgcaaagcaatttcatct 9683324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 9675486 - 9675430
Alignment:
Q  349 atataatatttttgagaagaaatgaggttgaaaatcccccaagtgcaaagcaatttc 405  Q
    ||||| || ||||||||||| | ||||||||| |||||| |||||||||||||||||    
T  9675486 atatattaattttgagaagagacgaggttgaatatccccgaagtgcaaagcaatttc 9675430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 586
Target Start/End: Complemental strand, 9683495 - 9683423
Alignment:
Q  514 aacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttat 586  Q
    ||||||| ||||||||  ||||||||||||| ||| ||||||| ||||||||||  |||||||  ||||||||    
T  9683495 aacatatatgcttatatgcatcttaaactttcgtgtatcaggttctcagaatgccggttatttccctgcttat 9683423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 9683509 - 9683423
Alignment:
Q  240 ttgttgttttgtcgaacttatatgcttatttacgtcttaaacttttgcgaatccggttcgctgaatgctggttatttctctgcttat 326  Q
    |||||||||||  |||| ||||||||||| | | ||||||||||| | | ||| ||||| | |||||| ||||||||| ||||||||    
T  9683509 ttgttgttttgctgaacatatatgcttatatgcatcttaaactttcgtgtatcaggttctcagaatgccggttatttccctgcttat 9683423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 10210720 - 10210638
Alignment:
Q  244 tgttttgtcgaacttatatgcttatttacgtcttaaacttttgcgaatccggttcgctgaatgctggttatttctctgcttat 326  Q
    ||||||||  ||| ||| |||||||  || ||||||||||||| ||||| ||||| | ||||||| ||||||| |||||||||    
T  10210720 tgttttgttaaacatatgtgcttatacacatcttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttat 10210638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University