View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_13 (Length: 386)
Name: NF4154_low_13
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 40626450 - 40626100
Alignment:
| Q |
19 |
ataatggagaagcttcattattattcccctgagaatgggattcactagaacccatgttatacattgaggaacaatgaccactctgatcatttgaacccaa |
118 |
Q |
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| T |
40626450 |
ataatggagaagcttcattattattcccctgagaatgggattcactagaacccatgttatacattgaggaacaatgaccactctgatcatttgaacccaa |
40626351 |
T |
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| Q |
119 |
aactgagtccacagaccccaagctatggtcatgcaaactcaagcctaagggttgcataaaagatgagcgagtattcaccatctgattcaatccattttca |
218 |
Q |
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| T |
40626350 |
aactgagtccacagaccccaagctatggtcatgcaaactcaagcctaagggttgcataaaagatgagtgagtattcaccatctgattcaatccattttca |
40626251 |
T |
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| Q |
219 |
ggatgatcatgtgtttgtggtactggtgatgacagaagagagagagcacaagaagtgttgttgtcacaaaacattttgtatctttctgaaaaaggattgg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40626250 |
ggatgatcatgtgtttgtggtactggtgatgacagaagagagagagcacaagaagtgttgttgtcacaaaacattttgtatctttctgaaaaaggattgg |
40626151 |
T |
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| Q |
319 |
tcctgctaaaggtgcgactcatggatgaagctggaagaggttgattgttca |
369 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40626150 |
tcctgctaaacgtgcgactcatggatgaagctggaagaggttgattgttca |
40626100 |
T |
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