View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_15 (Length: 379)
Name: NF4154_low_15
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 364
Target Start/End: Complemental strand, 34397370 - 34397015
Alignment:
| Q |
9 |
caccaacaccgtcatccaattcaacaataacacaatgatttactaaaagcacaaaatcaagaatcatgttgaatacctcagaattcttactcctagctgc |
108 |
Q |
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| T |
34397370 |
caccaacaccttcatccaattcaacaataccacaatcttttcctaagagagcaaaatcaagaatcatgttgaatacctcagaattcttactcctagctgc |
34397271 |
T |
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| Q |
109 |
agcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattcataaacaaactccaaatcaccagcagaa |
208 |
Q |
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| T |
34397270 |
agcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattcataaacaaactccaaatcaccagcagaa |
34397171 |
T |
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| Q |
209 |
gcagcagtgtacaaaagccatccaccatatccaccacgaatgagagagtttgttcctgttgctgtttcttcacactcaagcagaagtttctttgcaacat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34397170 |
gcagcagtgtacaaaagccatccaccatatccaccacgaatgagagagtttgttcctgtttctgtttcttcacactcaagcagaagtttctttgcaacat |
34397071 |
T |
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| Q |
309 |
gagacctacacttggcaacatcttcaaactgagcttcatcatcccacacagtttct |
364 |
Q |
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| T |
34397070 |
gagacctacacttggcaacatcttcaaactgagcttcatcatcccacacagtttct |
34397015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 38831511 - 38831669
Alignment:
| Q |
83 |
acctcagaattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattcat |
182 |
Q |
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| T |
38831511 |
acctcagaacttttacttctagctgcagcatacaaaatatcagtaacaccatactcaccttctccaaaaacaagagaagattctctcctcaacaattcac |
38831610 |
T |
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| Q |
183 |
aaacaaactccaaatcaccagcagaagcagcagtgtacaaaagccatccaccatatcca |
241 |
Q |
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| T |
38831611 |
aaacaaattccatatcaccagctgaagcagcagtgtaaagaagccatccaccatatcca |
38831669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 7997069 - 7997140
Alignment:
| Q |
90 |
aattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaag |
161 |
Q |
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| T |
7997069 |
aattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaag |
7997140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 8021733 - 8021662
Alignment:
| Q |
90 |
aattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaag |
161 |
Q |
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| T |
8021733 |
aattcttgcttctagcagcagcataaagtatatcagtaacaccatattctccttcaccgaaaaccaacaaag |
8021662 |
T |
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