View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4154_low_17 (Length: 358)
Name: NF4154_low_17
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 32134437 - 32134083
Alignment:
| Q |
12 |
acagacaagaacttcgttccttctaaaattcctgaaggatgtactccaattcatttgaatcttgtggtaattttctcaacatgttaagtataattattat |
111 |
Q |
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| T |
32134437 |
acagacaagaacttcgttccttctaaaattcctgaaggatgtactccaattcatttgaatcttgtggtaattttctcaacatattaaggataattattat |
32134338 |
T |
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| Q |
112 |
ttatttaat---------------------cacgtgattacactcaattatgtcactttcttaaattattacgggtgacagaca--tgttattttcgtgt |
188 |
Q |
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| T |
32134337 |
ttatttaattaattattatcaaacgcgactcacgtgattacactcaattatgtcactttcttaaattattacggttgacagacacatgttattttcgtgt |
32134238 |
T |
|
| Q |
189 |
ccaatgtccatgtctatgttagtgcttcatagaccattgtattttctaatttttacaaaaatttgcatactttatattgttatgctgcttcgatgagaaa |
288 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32134237 |
ccaatgtccatgtctatgttagtgcttcatagaccaatgtattttctaatttttacaaaaatttgcatactttatattgttatgctgcttggatgagaaa |
32134138 |
T |
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| Q |
289 |
ttcatgactgttgaaatgaagggttaatcttttttagattttccaacttgttatt |
343 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32134137 |
ttcatgactgttgaaatgaagggttaatcttttctagattttccaacttgttatt |
32134083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 30367634 - 30367671
Alignment:
| Q |
125 |
tgattacactcaattatgtcactttcttaaattattac |
162 |
Q |
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| T |
30367634 |
tgattacattcaattatgtcattttcttaaattattac |
30367671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 1830387 - 1830351
Alignment:
| Q |
125 |
tgattacactcaattatgtcactttcttaaattatta |
161 |
Q |
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|||||||||| |||||||||| ||||||||||||||| |
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| T |
1830387 |
tgattacactgaattatgtcattttcttaaattatta |
1830351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 25074833 - 25074797
Alignment:
| Q |
125 |
tgattacactcaattatgtcactttcttaaattatta |
161 |
Q |
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||||||||||||||||||||| ||||| ||||||||| |
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| T |
25074833 |
tgattacactcaattatgtcattttctcaaattatta |
25074797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 18750921 - 18750883
Alignment:
| Q |
124 |
gtgattacactcaattatgtcactttcttaaattattac |
162 |
Q |
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| T |
18750921 |
gtgattacattcaattatgtcattttcttaaattattac |
18750883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 22085048 - 22085012
Alignment:
| Q |
125 |
tgattacactcaattatgtcactttcttaaattatta |
161 |
Q |
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|
|||||||||| |||||||||| ||||||||||||||| |
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|
| T |
22085048 |
tgattacactaaattatgtcattttcttaaattatta |
22085012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 7988466 - 7988502
Alignment:
| Q |
125 |
tgattacactcaattatgtcactttcttaaattatta |
161 |
Q |
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|||||||| | |||||||||||||||||||||||||| |
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|
| T |
7988466 |
tgattacattgaattatgtcactttcttaaattatta |
7988502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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