View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_19 (Length: 346)
Name: NF4154_low_19
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 222 - 317
Target Start/End: Original strand, 36075166 - 36075261
Alignment:
| Q |
222 |
gcatattttgggagtgaagaccaatcagggtaaggaacctgctatgatattattcgctttcccacgtaatccaaaataatctccattctttatatt |
317 |
Q |
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| T |
36075166 |
gcatattttgggagtgaagaccaatcagggtaaggaacctgctatgatattattcgctttcccaagtaatccaaaataatctccattctttatatt |
36075261 |
T |
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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 36075073 - 36075133
Alignment:
| Q |
110 |
gactcgtttattgccaacattatcctagatacacaattcaaaactaagcatctactttgtc |
170 |
Q |
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| T |
36075073 |
gactcgtttattgccaacattatcctagatacacaattcaaaactaagcatctactttgtc |
36075133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36074964 - 36075004
Alignment:
| Q |
1 |
tggagcaaacagtactatcattgactcctttgatcacggtg |
41 |
Q |
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| T |
36074964 |
tggagcaaacagtactatcattgaatcctttgatcacggtg |
36075004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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