View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4154_low_2 (Length: 622)

Name: NF4154_low_2
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4154_low_2
NF4154_low_2
[»] chr1 (3 HSPs)
chr1 (18-323)||(28927246-28927550)
chr1 (432-500)||(8440035-8440103)
chr1 (37-112)||(14287953-14288028)
[»] chr3 (2 HSPs)
chr3 (432-574)||(48745315-48745457)
chr3 (39-110)||(7119797-7119868)
[»] chr7 (6 HSPs)
chr7 (37-108)||(30597242-30597313)
chr7 (37-112)||(45493095-45493170)
chr7 (64-112)||(6845153-6845201)
chr7 (36-112)||(6849699-6849775)
chr7 (39-112)||(32414626-32414699)
chr7 (61-112)||(6890160-6890211)
[»] chr4 (5 HSPs)
chr4 (434-505)||(13137275-13137346)
chr4 (438-500)||(26169066-26169128)
chr4 (39-112)||(52187789-52187862)
chr4 (432-505)||(42527185-42527258)
chr4 (436-503)||(8815548-8815616)
[»] chr8 (2 HSPs)
chr8 (432-504)||(43776414-43776487)
chr8 (34-109)||(27700913-27700988)
[»] chr5 (4 HSPs)
chr5 (432-485)||(24561309-24561361)
chr5 (434-485)||(24602344-24602394)
chr5 (38-112)||(25216876-25216950)
chr5 (38-112)||(25281031-25281105)
[»] chr2 (2 HSPs)
chr2 (432-474)||(38409216-38409258)
chr2 (39-112)||(43863135-43863208)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 28927550 - 28927246
Alignment:
Q  18 aaactgatcctctcacccttcattgattaggttctcaccttaattcctgatttattaaaggtcgagttccattccttgtgtaaattgaagtcactagatg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  28927550 aaactgatcctctcacccttcattgattaggttctcaccttaattcctgatttattcaaggttgagttccattccttgtgtaaattgaagtcactagatg 28927451  T
Q  118 taaaaattaattcatctttcatttcaaaatccgagatactgagagatgccaagttatagcaagcaactaccaagtcatggaaagaagatgcaaagtttcg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  28927450 taaaaattaattcatctttcatttcaaaatccgagatactgagagatgccaagttagagcaagcaactaccaagtcatggaaagaagatgcaaagttttg 28927351  T
Q  218 agaagcatttaatgcagcattgaaaccatcttcacatctaactgatggaccaattgactttttgtttcaaaaactcaccatcaacggaggttaacatctt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||    
T  28927350 agaagcatttaatgcagcattgaaaccatcttcacatctaactgatggaccaattgactttttgtttc-aaaattcaccatcaacagaggttaacatctt 28927252  T
Q  318 agatta 323  Q
    ||||||    
T  28927251 agatta 28927246  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 8440035 - 8440103
Alignment:
Q  432 agaggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaac 500  Q
    |||||||||||||||||||||||||| ||||||||  ||||||  ||||| ||||||||||||||||||    
T  8440035 agaggctaaaatgaattatattaccacgacaaaagatcctcctaacacaaaatgtgcgaaggaggaaac 8440103  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 14288028 - 14287953
Alignment:
Q  37 tcattgattaggttctcaccttaattcctgatttattaaaggtcgagttccattccttgtgtaaattgaagtcact 112  Q
    ||||||||||||||||| ||| ||| ||||||||||| ||| | ||||||| ||| ||| |||| |||||||||||    
T  14288028 tcattgattaggttctctcctcaatacctgatttattgaagattgagttcccttctttgcgtaatttgaagtcact 14287953  T

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Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 432 - 574
Target Start/End: Complemental strand, 48745457 - 48745315
Alignment:
Q  432 agaggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaacaccaagaaacgaatccggaatatcagcaata 531  Q
    |||| ||||||||||||||||||||| || |||||| | |||||||| ||||| |||||||||| ||||||||||||||||||| ||| |||||||||||    
T  48745457 agagactaaaatgaattatattaccacgataaaaggtcttcctggcataagatatgcgaaggag-aaacaccaagaaacgaatctggagtatcagcaata 48745359  T
Q  532 tttacagaatttacaaggcaacaacctaaa-cccaccaaaaaca 574  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  48745358 tttacagaatttacaaggaaacaacctaaaccccaccaaaaaca 48745315  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 7119797 - 7119868
Alignment:
Q  39 attgattaggttctcaccttaattcctgatttattaaaggtcgagttccattccttgtgtaaattgaagtca 110  Q
    |||| |||||||||| ||||| ||||||||||||| |||||  || | | |||||||||||| |||||||||    
T  7119797 attgcttaggttctctccttagttcctgatttattgaaggttaagctaccttccttgtgtaacttgaagtca 7119868  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 30597313 - 30597242
Alignment:
Q  37 tcattgattaggttctcaccttaattcctgatttattaaaggtcgagttccattccttgtgtaaattgaagt 108  Q
    ||||||||||||||||| | ||| ||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  30597313 tcattgattaggttctctcgttagttcctgatttattgaaggttgagttccattccttgtgtaacttgaagt 30597242  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 45493170 - 45493095
Alignment:
Q  37 tcattgattaggttctcaccttaattcctgatttattaaaggtcgagttccattccttgtgtaaattgaagtcact 112  Q
    ||||||||||||||||| ||| ||| ||||||||||| ||| ||||||||| ||| ||| |||| |||||||||||    
T  45493170 tcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcact 45493095  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 6845153 - 6845201
Alignment:
Q  64 ctgatttattaaaggtcgagttccattccttgtgtaaattgaagtcact 112  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||||||    
T  6845153 ctgatttattgaaggttgagttccattccttgtgtaatttgaagtcact 6845201  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 6849699 - 6849775
Alignment:
Q  36 ttcattgattaggttctcaccttaattcctgatttattaaaggtcgagttccattccttgtgtaaattgaagtcact 112  Q
    |||||| || |||||||| ||||| ||||||||||||| ||||| || ||||||||||||||  | |||||||||||    
T  6849699 ttcatttatcaggttctctccttagttcctgatttattgaaggttgaattccattccttgtgggacttgaagtcact 6849775  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 32414626 - 32414699
Alignment:
Q  39 attgattaggttctcaccttaattcctgatttattaaaggtcgagttccattccttgtgtaaattgaagtcact 112  Q
    ||||||||||||||  ||||  ||||||||||||| |||||  |||| | |||||||||||| |||||||||||    
T  32414626 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcact 32414699  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 6890160 - 6890211
Alignment:
Q  61 ttcctgatttattaaaggtcgagttccattccttgtgtaaattgaagtcact 112  Q
    ||||||||||||| ||||| ||||| |||||||||||||  |||||||||||    
T  6890160 ttcctgatttattgaaggttgagtttcattccttgtgtagcttgaagtcact 6890211  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 505
Target Start/End: Complemental strand, 13137346 - 13137275
Alignment:
Q  434 aggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaacaccaa 505  Q
    ||||||||||||||||||||||||  |||||||| | |||| |||||||||||||  |||| ||||||||||    
T  13137346 aggctaaaatgaattatattaccacaacaaaaggtcttcctagcacaagatgtgccgaggaagaaacaccaa 13137275  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 438 - 500
Target Start/End: Original strand, 26169066 - 26169128
Alignment:
Q  438 taaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaac 500  Q
    |||||| || |||||||||| |||||||| ||||||| ||||||| |||||||||||||||||    
T  26169066 taaaataaaatatattaccacgacaaaagaccctcctagcacaagttgtgcgaaggaggaaac 26169128  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 52187789 - 52187862
Alignment:
Q  39 attgattaggttctcaccttaattcctgatttattaaaggtcgagttccattccttgtgtaaattgaagtcact 112  Q
    |||| |||||||||  | ||| ||||||||||||| ||||| |||||||||||||||||||  |||||||||||    
T  52187789 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttgaagtcact 52187862  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 505
Target Start/End: Original strand, 42527185 - 42527258
Alignment:
Q  432 agaggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaacaccaa 505  Q
    |||||| ||||||||||||||||| |   ||||||||| |||| ||||||| ||||  ||||| ||||||||||    
T  42527185 agaggcaaaaatgaattatattactacatcaaaaggccttcctagcacaaggtgtgtcaaggaagaaacaccaa 42527258  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 8815616 - 8815548
Alignment:
Q  436 gctaaaatgaattatattaccatgacaaa-aggccctcctggcacaagatgtgcgaaggaggaaacacc 503  Q
    ||||||||||| ||||||||||| ||||| ||||| |||| |||||||  |||| ||||| ||||||||    
T  8815616 gctaaaatgaaatatattaccataacaaataggccttcctagcacaaggagtgctaaggaagaaacacc 8815548  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 432 - 504
Target Start/End: Complemental strand, 43776487 - 43776414
Alignment:
Q  432 agaggctaaaatgaattatattaccatgacaaaa-ggccctcctggcacaagatgtgcgaaggaggaaacacca 504  Q
    ||||||||||||||||||||||||||  |||||| |||| |||| ||||||| ||| | ||||| |||||||||    
T  43776487 agaggctaaaatgaattatattaccacaacaaaatggccttcctagcacaaggtgtactaaggaagaaacacca 43776414  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 27700988 - 27700913
Alignment:
Q  34 ccttcattgattaggttctcaccttaattcctgatttattaaaggtcgagttccattccttgtgtaaattgaagtc 109  Q
    ||||||||| |||||||||| || || ||||||||||||| ||||| |||||   |||||| ||||| ||||||||    
T  27700988 ccttcattgcttaggttctctccgtagttcctgatttattgaaggttgagttttcttccttatgtaacttgaagtc 27700913  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 432 - 485
Target Start/End: Original strand, 24561309 - 24561361
Alignment:
Q  432 agaggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatg 485  Q
    ||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||    
T  24561309 agaggcttaaatgaattatattaccacgac-aaagaccctcctggcacaagatg 24561361  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 485
Target Start/End: Original strand, 24602344 - 24602394
Alignment:
Q  434 aggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatg 485  Q
    ||||| |||||||||||||||||| ||| |||| ||||||||||||||||||    
T  24602344 aggcttaaatgaattatattaccacgac-aaagaccctcctggcacaagatg 24602394  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 25216876 - 25216950
Alignment:
Q  38 cattgattaggttctcaccttaattcctgatttattaaaggtcgagttccattccttgtgtaaattgaagtcact 112  Q
    |||||||||||||||| || || ||||  ||||||| ||||| ||||||| | |||||| ||| |||||||||||    
T  25216876 cattgattaggttctctccctagttccaaatttattgaaggttgagttccctaccttgtataacttgaagtcact 25216950  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 25281031 - 25281105
Alignment:
Q  38 cattgattaggttctcaccttaattcctgatttattaaaggtcgagttccattccttgtgtaaattgaagtcact 112  Q
    |||||||||||||||| || || ||||  ||||||| ||||| ||||||| | |||||| ||| |||||||||||    
T  25281031 cattgattaggttctctccctagttccaaatttattgaaggttgagttccctaccttgtataacttgaagtcact 25281105  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 432 - 474
Target Start/End: Complemental strand, 38409258 - 38409216
Alignment:
Q  432 agaggctaaaatgaattatattaccatgacaaaaggccctcct 474  Q
    ||||||||||||||||||||||||||  |||||||||| ||||    
T  38409258 agaggctaaaatgaattatattaccacaacaaaaggccttcct 38409216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 43863208 - 43863135
Alignment:
Q  39 attgattaggttctcaccttaattcctgatttattaaaggtcgagttccattccttgtgtaaattgaagtcact 112  Q
    |||| |||||||||  ||||| ||| || |||||| ||||| ||| ||| |||||||||||| |||||||||||    
T  43863208 attgcttaggttctttccttagttcgtggtttattgaaggtagagctcccttccttgtgtaacttgaagtcact 43863135  T

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