View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4154_low_22 (Length: 315)

Name: NF4154_low_22
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4154_low_22
NF4154_low_22
[»] chr3 (3 HSPs)
chr3 (19-109)||(28000821-28000911)
chr3 (19-99)||(28158341-28158421)
chr3 (26-99)||(28050002-28050075)
[»] chr5 (9 HSPs)
chr5 (132-194)||(10213672-10213734)
chr5 (137-194)||(9676076-9676133)
chr5 (132-308)||(9677614-9677780)
chr5 (132-194)||(10102419-10102482)
chr5 (132-190)||(12105768-12105826)
chr5 (194-282)||(9676163-9676249)
chr5 (215-263)||(10102360-10102408)
chr5 (194-250)||(10213765-10213821)
chr5 (207-282)||(12108062-12108138)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 28000911 - 28000821
Alignment:
Q  19 cttcatattttattaatttaaatgtcattgtttaataaatatggtaaaccacctttgaatcaatttcaagaggttcatattcgacggtccc 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  28000911 cttcatattttattaatttaaatgtcatcgtttaataaatatggtaaaccacctttgaatcaattttaagaggttcatattcgacagtccc 28000821  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 28158421 - 28158341
Alignment:
Q  19 cttcatattttattaatttaaatgtcattgtttaataaatatggtaaaccacctttgaatcaatttcaagaggttcatatt 99  Q
    ||||||||||||||||| ||||| |||||||||| ||||||| |||||||||| ||||| |||||| ||||||| ||||||    
T  28158421 cttcatattttattaatataaatctcattgtttactaaatatagtaaaccacccttgaaccaattttaagaggtgcatatt 28158341  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 28050075 - 28050002
Alignment:
Q  26 ttttattaatttaaatgtcattgtttaataaatatggtaaaccacctttgaatcaatttcaagaggttcatatt 99  Q
    |||||||||| |||||||||||||||| |||||||||||| |||||||||||  || || |||| |||||||||    
T  28050075 ttttattaatataaatgtcattgtttattaaatatggtaacccacctttgaacaaaatttaagatgttcatatt 28050002  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 10213672 - 10213734
Alignment:
Q  132 tgatcaatttaacttttttaaagaacatagtatactttattgtataattcatattgttgcact 194  Q
    |||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||    
T  10213672 tgatcaatttaacttttttaaagaacatagtacacttcatcgtataattcatattgttgcact 10213734  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 9676076 - 9676133
Alignment:
Q  137 aatttaacttttttaaagaacatagtatactttattgtataattcatattgttgcact 194  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  9676076 aatttaacttttttaaagaacatagtacacttcattgtataatttatattgttgcact 9676133  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 308
Target Start/End: Original strand, 9677614 - 9677780
Alignment:
Q  132 tgatcaatttaacttttttaaagaacatagtatactttattgtataattcatattgttgcactacacagagtatgaatgctggtttgaaatgactcataa 231  Q
    |||||||||||||||||||||| | ||||| | |||| |||||| ||||||||||||||||||        | ||| ||||| ||||||||| ||| |||    
T  9677614 tgatcaatttaacttttttaaa-agcatagaacacttcattgtacaattcatattgttgcact--------tgtgattgctgttttgaaatggctcgtaa 9677704  T
Q  232 atgcagatctgcattttgttgtcaaattctcacaccatcaaacaaatctgtcatgatggccttacccccaacctttg 308  Q
    ||||| || |||||||| ||| |||| | | |||||||||||||||| ||| |||||||| |||  |||| ||||||    
T  9677705 atgcatatttgcattttattgccaaagt-ttacaccatcaaacaaatttgttatgatggcattagacccagcctttg 9677780  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 10102482 - 10102419
Alignment:
Q  132 tgatcaatttaactttttt-aaagaacatagtatactttattgtataattcatattgttgcact 194  Q
    |||||| |||||||||||| ||||||||||||| | || |||||||||||||||||||||||||    
T  10102482 tgatcagtttaactttttttaaagaacatagtacaattcattgtataattcatattgttgcact 10102419  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 12105768 - 12105826
Alignment:
Q  132 tgatcaatttaacttttttaaagaacatagtatactttattgtataattcatattgttg 190  Q
    |||||||||||||||||| ||||| ||||| | |||| |||||| ||||||||||||||    
T  12105768 tgatcaatttaactttttcaaagagcatagaacacttcattgtacaattcatattgttg 12105826  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 9676163 - 9676249
Alignment:
Q  194 tacacagagtatgaatgctggtttgaaatgactcataaatgcagatctgcattttgttgtcaaattctcacaccatcaaacaaatctgt 282  Q
    |||| ||| ||||||||||| ||||||||||| ||  ||||||||| || ||||||||  ||||| ||||| | |||||||||||||||    
T  9676163 tacagagattatgaatgctgctttgaaatgacaca--aatgcagatttgtattttgtttccaaatcctcacgctatcaaacaaatctgt 9676249  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 10102408 - 10102360
Alignment:
Q  215 tttgaaatgactcataaatgcagatctgcattttgttgtcaaattctca 263  Q
    ||||||||||||||||||| ||||| || ||||||||| ||||| ||||    
T  10102408 tttgaaatgactcataaatacagatttgtattttgttgccaaatcctca 10102360  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 10213765 - 10213821
Alignment:
Q  194 tacacagagtatgaatgctggtttgaaatgactcataaatgcagatctgcattttgt 250  Q
    |||||| ||||||||||||| ||  ||||||||  ||||||||||| ||||||||||    
T  10213765 tacacaaagtatgaatgctgcttcaaaatgacttgtaaatgcagatttgcattttgt 10213821  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 12108062 - 12108138
Alignment:
Q  207 aatgctggtttgaaatgactcataaatgcagatctgca-ttttgttgtcaaattctcacaccatcaaacaaatctgt 282  Q
    ||||||| ||||||||||||||| ||||||||| || | |||||||   |||| |||||||||| |||| |||||||    
T  12108062 aatgctgctttgaaatgactcatgaatgcagatttgtatttttgttcctaaatcctcacaccattaaaccaatctgt 12108138  T

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