View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_24 (Length: 301)
Name: NF4154_low_24
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 2992287 - 2992101
Alignment:
| Q |
10 |
agaacctgtgatcaatcatcctcttatgagcaaataaaaaataacgttaacaagacaagaaaattcactaattaatcattcagaaaatccatcttcacgc |
109 |
Q |
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| T |
2992287 |
agaacccgtgatcaatcatcctcttatgagcaaatacaaaataacgttaacaagacaagaaaattcactaat-aatcattcagaaaatccatcttcacgc |
2992189 |
T |
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| Q |
110 |
atctcctccagtcttccatgtcttttattgagccagctagcttaacacaagaacacatttaatcagtatgatagtgtatgaatattgg |
197 |
Q |
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| T |
2992188 |
atctcctccagtcttccatgtcttttattgagccagctagcttaacacaagaacacatttaatcagtatgatagtgtatgaatattgg |
2992101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 2992058 - 2991967
Alignment:
| Q |
195 |
tggcatacaagtaacaatattgcatatttttaaatcttatggagtatatcaatatttaaaatgttattaaagaataaacaaccaaagttcct |
286 |
Q |
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| T |
2992058 |
tggcatacaagtaacaatattgcatatttttaaatcttatggagtatatcaatatttaaaatgttattaaagaataaacaaccaaagttcct |
2991967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 2983130 - 2983043
Alignment:
| Q |
98 |
ccatcttcacgcatctcctccagtcttccatgtcttttattgagccagctagcttaacacaagaacacatttaatcagtatgatagtg |
185 |
Q |
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| T |
2983130 |
ccatcttcacgcatctccttcagtcttccatttcttttattgagcaagctagcttaaaacaagcacacattaaatcagtatgatagtg |
2983043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 2706357 - 2706441
Alignment:
| Q |
98 |
ccatcttcacgcatctcctccagtcttccatgtcttttattgagccagctagcttaacacaagaacacatttaatcagtatgata |
182 |
Q |
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| T |
2706357 |
ccatcttcacaaatcttttccagtcctccatttcttttattgagcaagctagattaacaaaagcacacattaaatgagtatgata |
2706441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 18358673 - 18358481
Alignment:
| Q |
10 |
agaacctgtgatcaatcatcctcttatgagcaaataaaaaataacgttaacaagacaa------gaaaattcactaattaatcattcagaaaatccatct |
103 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |
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| T |
18358673 |
agaacccgtgatcaatcatcctcttatgagcaaataaaaaataacgttaacaaaacaaaaacaagaaaattcactaat-aatcattcagaaaatccatct |
18358575 |
T |
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| Q |
104 |
tcacgcatctcctccagtcttccatgtcttttattgagccagctagcttaacacaagaacacatttaatcagtatgatagtgtatgaatattgg |
197 |
Q |
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| T |
18358574 |
tcacgcatctcctccagtcttccatgtcttttattgagccagctagcttaacacaagaacatatttaatcagtatgatagtgtatgaatattgg |
18358481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 18358439 - 18358348
Alignment:
| Q |
195 |
tggcatacaagtaacaatattgcatatttttaaatcttatggagtatatcaatatttaaaatgttattaaagaataaacaaccaaagttcct |
286 |
Q |
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| T |
18358439 |
tggcatacaagtaacaatattgcatatttttaaatcttatggagtatatcaatatttaaaatgttattaaagaataaacaaccaaagttcct |
18358348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 10752959 - 10753043
Alignment:
| Q |
98 |
ccatcttcacgcatctcctccagtcttccatgtc-ttttattgagccagc-tagcttaacacaagaacacatttaatcagtatga |
180 |
Q |
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| T |
10752959 |
ccatcttcacgcatctacttcagtcttccatttctttttatcgagcaagcttagcttcaaacaagcacacatttattcagtatga |
10753043 |
T |
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