View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_25 (Length: 296)
Name: NF4154_low_25
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 4999189 - 4998920
Alignment:
| Q |
12 |
atcatcacaactacaacaaaacaacagtttcactatattagcatgtctaattctacccaatgtttcaatctctgacttaaactcagattctgtatcaggt |
111 |
Q |
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| T |
4999189 |
atcatcacaactacaacaaaacaacagtttcactatattagcatgtctaattctacccaatgtttcaatctctgacttaaactcagattctgtatcaggt |
4999090 |
T |
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| Q |
112 |
ttatgtgttccaccaccccaaagctttttcactgcaactatttgacctgttttcaccttcaccttataaacctgacctgatccacctcttccaatcaaat |
211 |
Q |
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| T |
4999089 |
ttatgtgttccaccaccccaaagctttttcactgcaactatttgacctgttttcaccttcaccttataaacctgacctgacccacctcttccaatcaaat |
4998990 |
T |
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| Q |
212 |
tctcattggttaaaaaaggtactatatcttcctcattgaacccaactctctgaaaagctgttgtcataaa |
281 |
Q |
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| T |
4998989 |
tctcattggttaaaaaaggtactatatcttcctcattgaacccaactctctgaaaagctgttgtcataaa |
4998920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 281
Target Start/End: Original strand, 4798238 - 4798451
Alignment:
| Q |
62 |
ttctacccaatgtttcaatctctgacttaaactcagattctgtatcaggtttatgtgttccac---caccccaaagctttttcactgcaactatttgacc |
158 |
Q |
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| T |
4798238 |
ttctgcccaatgtttcgatttctgactcaaacacagattctgtatcgggttgttgtgttccactaccacccctaagctttttcaccgcagctatgtgacc |
4798337 |
T |
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| Q |
159 |
tgttttcaccttcaccttataaacctgacctgatccacctcttccaatcaaattctcattggttaaaaaaggtactatatcttcctcattgaacccaact |
258 |
Q |
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| T |
4798338 |
cgttttcaccttcactttat-aacccga--------acctcctcctaataaattgtcaattgttaaaaaaggaattatatcttcttcattgaaccctact |
4798428 |
T |
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| Q |
259 |
ctctgaaaagctgttgtcataaa |
281 |
Q |
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| T |
4798429 |
ctctgaaacgtggttgtcataaa |
4798451 |
T |
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