View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_3 (Length: 594)
Name: NF4154_low_3
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 15 - 586
Target Start/End: Original strand, 978031 - 978602
Alignment:
| Q |
15 |
aaaatccacccaattaatatcatcattgacattttcaatatacattcctgctagtattggattggagatgttgaactgcactttgactttaatgatctta |
114 |
Q |
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| T |
978031 |
aaaatccactcaattaatatcatcattgacattttcaatatacattcttgctagtattggattagagatgttgaactgcactttgactttaatgatctta |
978130 |
T |
|
| Q |
115 |
gcattattggggtattcatatattgctgattcctctacctgtccaatctgagcacccaattgataacccatagctacagttttgcaatgtagtggtagac |
214 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
978131 |
gcattattggggtattcatgtattgctgattcctctacctgtccaatctgagcacccaattgctaacccatagctacagttttgcaatgtagtggtagac |
978230 |
T |
|
| Q |
215 |
cccaaatttgtatccaaagtgggacatgtatgaaatctagctcttgaatattagtacttctattccatagatgtaactttagccagacatttctaataat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
978231 |
cccaaatttgtatccaaagtgggacatgtatgaaatctagcttttgaatattagtgcttctattccatagatgtaactttagccagacatttataataat |
978330 |
T |
|
| Q |
315 |
ccatggctcccccttaagtatccttttaatgtgagactctctttcaaaagataattgatacaaattattctcaagttctgtgatcttgaatccattagga |
414 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
978331 |
ccatggctcccctttaagtatccttttaatgtcagactctctttcaaaagataattgatacaaattattctcaagttctgtgatcttgaatccattaggg |
978430 |
T |
|
| Q |
415 |
ttacaccagattcccattagagagttgtaaagaacttgcttagagatctgtttagttgtaaggagtttacctattatgttgtttgtacattgtttgatgc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
978431 |
ttacaccagattcccattagagagttgtaaagaacttgcttagagatctgtttagttgtaaggagtttacctattatgctgtttgtacattgttttatgt |
978530 |
T |
|
| Q |
515 |
cttcccccagaacttcttcatcatacataaaaaatggcccttcataagccattgtatttttctcagatcctt |
586 |
Q |
| |
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| T |
978531 |
cttcccccagaacttcttcatcatacataaaaaatggccctttagaagccattgtattttccccagatcctt |
978602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 43138358 - 43138881
Alignment:
| Q |
19 |
tccacccaattaatatcatcattgacattttcaatatacattcctgctagtattggattggagatgttgaactgcactttgactttaatgatcttagcat |
118 |
Q |
| |
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||||||||||| || |||||||| |||| ||||| ||||| ||||| || |||||||| || |||||| | || || || || || ||||| ||||||| |
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| T |
43138358 |
tccacccaattgatttcatcattctcattgtcaatgtacatacctgccagaattggattagaaatgttgtattggaccttaacctttatgattttagcat |
43138457 |
T |
|
| Q |
119 |
tattggggtattcatatattgctgattcctctacctgtccaatctgagcacccaattgataacccatagctacagttttgcaatgtagtggtagacccca |
218 |
Q |
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|||| || |||||||| || || | ||| || | | ||||||||| || || | ||||| ||||||||||| || || ||||||| || | |||||| |
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| T |
43138458 |
tatttggatattcatagatagcagcttcttccaattttccaatctgtgctccaatttgatgacccatagctattgtcttacaatgtaagggcaaacccca |
43138557 |
T |
|
| Q |
219 |
aatttgtatccaaagtgggacatgtatgaaatctagctcttgaatattagtacttctattccatagatgtaactttagccagacatttctaataatccat |
318 |
Q |
| |
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| || |||||||| ||| |||| | ||||| | ||||| ||||| || |||| ||||| |||| | || | |||||||||||| || ||||| |
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| T |
43138558 |
gacctgaatccaaagaggggcatgagtaaaatccaattcttgtatattggtgtttctgttccaaagatagagtttcaaccagacatttcttatgatccaa |
43138657 |
T |
|
| Q |
319 |
ggctcccccttaagtatccttttaatgtgagactctctttcaaaagataattgatacaaattattctcaagttctgtgatcttgaatccattaggattac |
418 |
Q |
| |
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|| || |||||||| || || || |||| | || |||||||||| ||||| || | |||||| || | |||||||||||| || ||| ||||||| | |
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| T |
43138658 |
ggttctcccttaaggattctgttgatgtcaacttccttttcaaaagaaaattggtatagattattttccaattctgtgatcttaaagccagtaggattgc |
43138757 |
T |
|
| Q |
419 |
accagattcccattagagagttgtaaagaacttgcttagagatctgtttagttgtaaggagtttacctattatgttgtttgtacattgtttgatgccttc |
518 |
Q |
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|||| || ||||||| ||| | | || | |||||||||||| ||||| | | ||| ||||||||||| || |||| | |||||||||| ||||| |
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| T |
43138758 |
accaaatccccattaaagaactatggaggatttgcttagagatttgttttgaggcaagcagtttacctatgatactgttcttgcattgtttgagtccttc |
43138857 |
T |
|
| Q |
519 |
ccccagaacttcttcatcatacat |
542 |
Q |
| |
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| |||| |||||| |||||||| |
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| T |
43138858 |
ctggagaagttcttcttcatacat |
43138881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 416 - 545
Target Start/End: Complemental strand, 2296224 - 2296095
Alignment:
| Q |
416 |
tacaccagattcccattagagagttgtaaagaacttgcttagagatctgtttagttgtaaggagtttacctattatgttgtttgtacattgtttgatgcc |
515 |
Q |
| |
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||||||| || ||||| || |||||||||||||| || || | ||| |||||||| || || |||||||| | |||| ||||| | |||||||| ||||| |
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| T |
2296224 |
tacaccatatgcccatgagggagttgtaaagaacctgtttggggatttgtttagtagttagaagtttacccaatatgctgtttctgcattgttttatgcc |
2296125 |
T |
|
| Q |
516 |
ttcccccagaacttcttcatcatacataaa |
545 |
Q |
| |
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|| ||| |||||||| ||||||||||| |
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| T |
2296124 |
ctcatccaccacttcttcttcatacataaa |
2296095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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