View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_35 (Length: 262)
Name: NF4154_low_35
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 48932170 - 48932409
Alignment:
| Q |
1 |
aaagcaggagggtaatgagaaccatgttgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagcattagagata |
100 |
Q |
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| T |
48932170 |
aaagcaggagggtaatgagaaccatgttgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagcattagagata |
48932269 |
T |
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| Q |
101 |
aaactgctgcactgaatagcgtgaaaagccannnnnnnncagctcccataactgatttcactacgtgggcatatgaaagtttagattttgagaagtgggt |
200 |
Q |
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| T |
48932270 |
aaactgctgcactgaatagcgtgaaaagccattttttttcagctcccataactgatttcactacgtgggcatatgaaagtttagattttgagaagtgggt |
48932369 |
T |
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| Q |
201 |
ttggttaaagtttggattttgaaactaattgcgttactgg |
240 |
Q |
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| T |
48932370 |
ttggttaaagtttggattttgaaactaattgcgttactgg |
48932409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 9392485 - 9392259
Alignment:
| Q |
8 |
gagggtaatgagaaccatgttgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagcattagagataaaactgc |
107 |
Q |
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| T |
9392485 |
gagggtaatgagaaccatgttgaacaagagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagcattagagataaaactgc |
9392386 |
T |
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| Q |
108 |
tgcactgaatagcgtgaaaagccannnnnnnncagctcccataactgatttcactacgtgggcatatgaaagtttagattttgagaagtgggtttggtta |
207 |
Q |
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| T |
9392385 |
tacactgaatagcgtgaaaagcca-tttttttcagctcccataactaatttcactatgtgggcatatgaaatcaacgattttgagaagtggg-ttggtta |
9392288 |
T |
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| Q |
208 |
aagtttggattttgaaactaattgcgtta |
236 |
Q |
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| T |
9392287 |
aagtttggattttgaaactatttgtgtta |
9392259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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