View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_39 (Length: 249)
Name: NF4154_low_39
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 45142713 - 45142892
Alignment:
| Q |
1 |
cagcctggagagataagtgatgcagaaacagattgagaatggttcttgtggcccatttcgagatcctattagtgagtatttcaacttctcgtgtttatag |
100 |
Q |
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| T |
45142713 |
cagcctggagagataagtgatgcagaaacagattgagaatggttcttgtggcccatttcgagatcctattagtgagtatttcaacttctcgtgtttatag |
45142812 |
T |
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| Q |
101 |
tttcatccagcttctagagtggaaaagtgtttaacacggtctacaaaaaacaaatgcttggaaattgtttgaaactctaa |
180 |
Q |
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| T |
45142813 |
tttcatccggcttctagagtggaaaagtgtttaacacggtctacaacaaacaaatgcttggaaattgtttgatactctaa |
45142892 |
T |
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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 45142927 - 45142990
Alignment:
| Q |
177 |
ctaatattcattttctcttgtttatttttgaattaacactgattaaatgactgtcttatctgtg |
240 |
Q |
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| T |
45142927 |
ctaatattcattttctcttgtttatttttgaattaacactgattaaatgactgtcttatctgtg |
45142990 |
T |
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