View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_4 (Length: 563)
Name: NF4154_low_4
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 37053347 - 37052814
Alignment:
| Q |
18 |
ttttcattagatccagctcaattactacaatattatgttgatgttgatataatatagtgccttcacgaaagagtattcaagttgacatatgcatatgtta |
117 |
Q |
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| T |
37053347 |
ttttcattagatccagctcaattactacaatattatgttgatgttgatataatatagtgccttcacgaaagagtattcaagttgacatatgcatatgtta |
37053248 |
T |
|
| Q |
118 |
atgtgacattgaactaacacaacacttgaaatagaaacataaatcaactcattaagtgatcaaggacatagttttaacttctatattactaaaaattgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37053247 |
atgtgacattgaactaacacaacacttgaaatagaaacataaatcaactcattaagtgatcaaggacatagttttaacttctgtattactaaaaattgaa |
37053148 |
T |
|
| Q |
218 |
ataatgtcatttagtttatattagttaaagattaaaataaacacacggattctnnnnnnntatgtttgatttagcc-nnnnnnngaaaagattgacatcc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |||||||||||||||| |
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| T |
37053147 |
ataatgtcatttagtttatattagttaaagattaaaataaacacacggattctaaaaaaataagattgatttagccaaaaaaaagaaaagattgacatcc |
37053048 |
T |
|
| Q |
317 |
aataattcagatgagaaaaaagagtaactacctctatcnnnnnnnnnnagcagatgccaatgaatgattaagaggatcgatcaggaaataaaaaatgaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37053047 |
aataattcagatgagaaaaaagagtaactacctctatc-tttttttttagcagatgccaatgaatgattaagaggatcgatcaggaaataaaaaatgaaa |
37052949 |
T |
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| Q |
417 |
aggtcttttctattataaaagtgaaactttttaaattattgaaggattgtaatttctagattcctttattgcgtccaattaacatttgcaagaccttgca |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37052948 |
aggtcttttctattataaaagtgaaactttttaaattattgaaggattgtaatttctagattcttttattgcgtccaattaacatttgcaagaccttgca |
37052849 |
T |
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| Q |
517 |
gaaatgatcaaaagatttgagtgaacgttgatgat |
551 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
37052848 |
gaaatgatcaaaagatttgagtgaacgttgatgat |
37052814 |
T |
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