View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_42 (Length: 241)
Name: NF4154_low_42
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_42 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 36073332 - 36073555
Alignment:
| Q |
19 |
gaaatatctcaactttcataatttagtcatatcaaactcagagcttaactgatctttgattctttaaacttcatctaagttgtttctagttatcagtaaa |
118 |
Q |
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| T |
36073332 |
gaaatatctcaattttcataatttagtcatatcaaactcagagcttaactgatctttgattctttaaacttcatctaagttgtttctagttatcagtaaa |
36073431 |
T |
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| Q |
119 |
tcatcaacatacaagcaaattatgttaatgttgttctgatttgtgcctt-caacatagattccatgctcaactgtgcattttgagtagctattttgcttg |
217 |
Q |
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| T |
36073432 |
tcatcaacatataagcaaattatgttaatgttgttctgatttgtgccttccaacatagattccatgctcaactgtgcattttgagtagctattttgcttg |
36073531 |
T |
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| Q |
218 |
agaaaatcatatgttcttatattc |
241 |
Q |
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| T |
36073532 |
agaaaatcatatgttcttatattc |
36073555 |
T |
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Back To:
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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 12448058 - 12448240
Alignment:
| Q |
45 |
tcatatcaaactcagagcttaactgatctttgattctttaaacttcatctaagttgtttctagttatcagtaaatcatcaacatacaagcaaattatgtt |
144 |
Q |
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| T |
12448058 |
tcatatcaaattcagagcttaactgacctttgtttctttcaacttcatctaagctgttttaagctatcagcaaatcatcaacatataggcaaactatgtc |
12448157 |
T |
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| Q |
145 |
aatgttgttctgatttgtgccttcaacatagattccatgctcaactgtgcattttgagtagctattttgcttgagaaaatcat |
227 |
Q |
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| T |
12448158 |
aatgttgttcttattggtacctttgacataaatttcatgctcaattgtgcattctgagtagccatttttcttgagaaattcat |
12448240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 6362966 - 6362855
Alignment:
| Q |
116 |
aaatcatcaacatacaagcaaattatgttaatgttgttctgatttgtgccttcaacatagattccatgctcaactgtgcattttgagtagctattttgct |
215 |
Q |
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||||||| ||| || ||||||| |||||| | ||||||||||| | |||| |||||||||||||||||||||||||||| |||||||| ||||| || |
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| T |
6362966 |
aaatcattaacttataagcaaactatgttgacattgttctgattggcacctttgacatagattccatgctcaactgtgcattatgagtagccattttcct |
6362867 |
T |
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| Q |
216 |
tgagaaaatcat |
227 |
Q |
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| T |
6362866 |
tgagaaactcat |
6362855 |
T |
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