View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_5 (Length: 557)
Name: NF4154_low_5
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 395
Target Start/End: Original strand, 14009804 - 14010175
Alignment:
| Q |
20 |
caattcagctataagtaatcaatgatataaattgaattggatttctattatggatgcacactaatatactataccatgtgggcttctgatctagcacgga |
119 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14009804 |
caattcagctataagtaatcaatgatataa-ttgaattagatttctattatcgatgcacactaatatactataccatgtgggcttctgatctagcacgga |
14009902 |
T |
|
| Q |
120 |
ctgagactcgtgcttttctcatagtggcttctgcattggcttgatcagcagcgttggaggggtttaatctgggaagctgacttcggtccaaaagttgtac |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14009903 |
ctgagactcgtgcttttctcatagtggcttctgcattggcttgatcagcagcgttggaggggtttaatctgggaagctgacttcggtccaaaagttgtac |
14010002 |
T |
|
| Q |
220 |
tagttctgatgcgtccggatcaggctctttatgattgttctgaggtgtgcatggttcaggctcttgctgatcatctacttctgctgctggagcattcatg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
14010003 |
tagttctgatgcgtccggatcaggctctttatgattgttctgaggtgtgcatggttcaggctcttgctgatcatctacttttgctgctggaccattcatg |
14010102 |
T |
|
| Q |
320 |
aactttctagccaccacaccatcatctcctttctcctcagcttttcctttgacaatctgaaatgtaaaaaacatat |
395 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14010103 |
aactttctagccaccacac---catctcctttctcctcagcttttcctttgacaatctgaaatgtaaaaaacatat |
14010175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 395
Target Start/End: Complemental strand, 19614411 - 19614040
Alignment:
| Q |
20 |
caattcagctataagtaatcaatgatataaattgaattggatttctattatggatgcacactaatatactataccatgtgggcttctgatctagcacgga |
119 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19614411 |
caattcagctataagtaatcaatgatataa-ttgaattagatttctattatcgatgcacactaatatactataccatgtgggcttctgatctagcacgga |
19614313 |
T |
|
| Q |
120 |
ctgagactcgtgcttttctcatagtggcttctgcattggcttgatcagcagcgttggaggggtttaatctgggaagctgacttcggtccaaaagttgtac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19614312 |
ctgagactcgtgcttttctcatagtggcttctgcattggcttgatcagcagcgttggaggggtttaatctgggaagctgacttcggtccaaaagttgtac |
19614213 |
T |
|
| Q |
220 |
tagttctgatgcgtccggatcaggctctttatgattgttctgaggtgtgcatggttcaggctcttgctgatcatctacttctgctgctggagcattcatg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
19614212 |
tagttctgatgcgtccggatcaggctctttatgattgttctgaggtgtgcatggttcaggctcttgctgatcatctacttttgctgctggaccattcatg |
19614113 |
T |
|
| Q |
320 |
aactttctagccaccacaccatcatctcctttctcctcagcttttcctttgacaatctgaaatgtaaaaaacatat |
395 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19614112 |
aactttctagccaccacac---catctcctttctcctcagcttttcctttgacaatctgaaatgtaaaaaacatat |
19614040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 55365732 - 55366105
Alignment:
| Q |
20 |
caattcagctataagtaatcaatgatataaattgaattggatttctattatggatgcacactaatatactataccatgtgggcttctgatctagcacgga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
55365732 |
caattcagctataagtaatcaatgatataa-ttgaattagatttctattatcgatgcacactaatataatataccatgtgggcttctgatctagcacgga |
55365830 |
T |
|
| Q |
120 |
ctgagactcgtgcttttctcatagtggcttctgcattggcttgatcagcagcgttggaggggtttaatctgggaagctgacttcggtccaaaagttgtac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55365831 |
ctgagactcgtgcttttctcatagtggcttctgcattggcttgatcagcagcgttggaggggtttaatctgggaagctgacttcggtccaaaagttgtac |
55365930 |
T |
|
| Q |
220 |
tagttctgatgcgtccggatcaggctctttatgattgttctgaggtgtgcatggttcaggctcttgctgatcatctacttctgctgctggagcattcatg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55365931 |
tagttctgatgcgtccggatcaggctctttatgattgttctgaggtgtgcatggttcaggctcttgctgatcatctacttctgctgctggaccattcatg |
55366030 |
T |
|
| Q |
320 |
aactttctagccaccacaccatcatctcctttctcctcagcttttcctttgacaatctgaaatgtaaaaaacatatac |
397 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
55366031 |
aactttctagccaccacac---catctcctttctccacagcttttccattgacaatctgaaatgtaaaaaacatatac |
55366105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 462 - 552
Target Start/End: Original strand, 55366162 - 55366252
Alignment:
| Q |
462 |
catgatcatgttctgtggtttggttctgttgctgttgcattaaggatataaaacgcttatgcaagtttgtgtagctactgttcatctcact |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
55366162 |
catgatcatgttctgtggtttggttctgttgctgttgcattaaggatataaaacggttatgcaagtttgtgtagctactgttcatgtcact |
55366252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 8497382 - 8497446
Alignment:
| Q |
101 |
gcttctgatctagcacggactgagactcgtgcttttctcatagtggcttctgcattggcttgatc |
165 |
Q |
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||||||||||||||||| || ||||| || ||||||||||| || ||||||| ||| |||||||| |
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| T |
8497382 |
gcttctgatctagcacgaacggagacacgagcttttctcattgtagcttctgtatttgcttgatc |
8497446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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