View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4154_low_50 (Length: 234)
Name: NF4154_low_50
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_50 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2451076 - 2450853
Alignment:
| Q |
1 |
gagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcatatgccccatatgcaatattctcccttatggtaccaccaaacaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2451076 |
gagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcatatgctccatatgcaatattctcccttatggtaccaccaaacaatgt |
2450977 |
T |
|
| Q |
101 |
tggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatcactaccatcaatcgtcactatcccttttattggatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2450976 |
tggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagactttatatcactaccatcaatcgtcactatcccttttattggatca |
2450877 |
T |
|
| Q |
201 |
taaaatctctcaattagtcctatg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2450876 |
taaaatctctcaattagtcctatg |
2450853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2440354 - 2440128
Alignment:
| Q |
1 |
gagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgccccatatgcaatattctcccttatggtaccaccaaacaa |
97 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||||||||||||||||| ||||||| |||| |||||| ||||||| || |||||||||||||||||||| |
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|
| T |
2440354 |
gagcatttgcagcctttgatgcctctataatctcactctcatcaactttatcatcatatgctccatatacaatattttctcttatggtaccaccaaacaa |
2440255 |
T |
|
| Q |
98 |
tgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatcactaccatcaatcgtcactatcccttttattgga |
197 |
Q |
| |
|
|||||| |||||||||||||||| |||||| ||||||||||| | ||||||||||| |||||| || |||||||||| |||||||||||||| | |||| |
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|
| T |
2440254 |
tgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagattataagtttttatgtctctaccatcaactgtcactatccctttaagtgga |
2440155 |
T |
|
| Q |
198 |
tcataaaatctctcaattagtcctatg |
224 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
2440154 |
tcatagaatctctcaattagtcctatg |
2440128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2623844 - 2623618
Alignment:
| Q |
1 |
gagcatttgcagccttagctgcatctataatctcactctcatcaaccttatca---tatgccccatatgcaatattctcccttatggtaccaccaaacaa |
97 |
Q |
| |
|
|||||||||||||||| | ||| |||||||| |||||||||||||||| |||| |||| |||||||||||||| || ||||||||||||||||||| |
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|
| T |
2623844 |
gagcatttgcagcctttgatgcctctataatttcactctcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaacaa |
2623745 |
T |
|
| Q |
98 |
tgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatcactaccatcaatcgtcactatcccttttattgga |
197 |
Q |
| |
|
|||||| |||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| || || |||||||| ||||||||||||| | |||| |
|
|
| T |
2623744 |
tgttggttcttgactcacaagtgcaatgtgtttccttaatgaccttagattataagtttttatgtctctgccatcaattgtcactatcccttcaagtgga |
2623645 |
T |
|
| Q |
198 |
tcataaaatctctcaattagtcctatg |
224 |
Q |
| |
|
||||| || |||||||||||||||||| |
|
|
| T |
2623644 |
tcatagaacctctcaattagtcctatg |
2623618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2641185 - 2641411
Alignment:
| Q |
1 |
gagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgccccatatgcaatattctcccttatggtaccaccaaacaa |
97 |
Q |
| |
|
|||||||||||||||| | ||| | |||||||||||||||||||| ||||||| | || || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
2641185 |
gagcatttgcagcctttgatgcctgaataatctcactctcatcaactttatcatcataggctccgtatgcaatattttcccttatggtaccaccaaacag |
2641284 |
T |
|
| Q |
98 |
tgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatcactaccatcaatcgtcactatcccttttattgga |
197 |
Q |
| |
|
|||||| |||||||| ||||||| ||| || |||||||| ||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
2641285 |
tgttggttcttgacttacaagtgcaatgtgtttccttaacgaccttagattataagactttatatcttcaccatcaattgtcactatccctttaattgga |
2641384 |
T |
|
| Q |
198 |
tcataaaatctctcaattagtcctatg |
224 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
2641385 |
tcatagaatctctcaattagtcctatg |
2641411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2596529 - 2596754
Alignment:
| Q |
1 |
gagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgccccatatgcaatattctcccttatggtaccaccaaacaa |
97 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||||||||||||||||| ||||||| |||| |||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
2596529 |
gagcatttgcagcctttgatgcctctataatctcactctcatcaactttatcatcatatgctccatatacaatattttcttttatggtaccaccaaacaa |
2596628 |
T |
|
| Q |
98 |
tgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatcactaccatcaatcgtcactatcccttttattgga |
197 |
Q |
| |
|
|||||| |||||||||||||||| |||||| ||||||||||| | ||||||||| | ||||| || ||||| ||||| |||||||||||||| | |||| |
|
|
| T |
2596629 |
tgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatgga |
2596728 |
T |
|
| Q |
198 |
tcataaaatctctcaattagtcctat |
223 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
2596729 |
tcatagaatctctcaattagtcctat |
2596754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2568970 - 2569196
Alignment:
| Q |
1 |
gagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgccccatatgcaatattctcccttatggtaccaccaaacaa |
97 |
Q |
| |
|
||||| |||||||||| | ||| |||||||| |||||||||||||||||||||| | || |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
2568970 |
gagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctccatatgcaatattttcccttatggtaccactaaacaa |
2569069 |
T |
|
| Q |
98 |
tgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatcactaccatcaatcgtcactatcccttttattgga |
197 |
Q |
| |
|
|||||| |||||||||||||||| ||| || | ||||||||||||||||||||| | ||||| || ||||||||||| |||||||||||||| | |||| |
|
|
| T |
2569070 |
tgttggttcttgactcacaagtgcaatgtgttcccttaatgaccttagattatatgtctttatgtctctaccatcaattgtcactatccctttaagtgga |
2569169 |
T |
|
| Q |
198 |
tcataaaatctctcaattagtcctatg |
224 |
Q |
| |
|
||||| ||||| ||||| ||||||||| |
|
|
| T |
2569170 |
tcatagaatctttcaataagtcctatg |
2569196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2592300 - 2592074
Alignment:
| Q |
1 |
gagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgccccatatgcaatattctcccttatggtaccaccaaacaa |
97 |
Q |
| |
|
|||||||||||||||| | ||| |||||||| ||||| |||||||||||||||| ||| |||||||||||||| || | |||||||||| |||||| |
|
|
| T |
2592300 |
gagcatttgcagcctttgatgcctctataatttcactttcatcaaccttatcatcatatgatccatatgcaatattttctttgatggtaccactaaacaa |
2592201 |
T |
|
| Q |
98 |
tgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatcactaccatcaatcgtcactatcccttttattgga |
197 |
Q |
| |
|
|||||| |||||||||||||||| ||| || ||||||| |||||||||||||||| |||||| || ||||||||||| |||||||||||||| | |||| |
|
|
| T |
2592200 |
tgttggttcttgactcacaagtgcaatgtgtttccttagtgaccttagattataaatttttatgtccctaccatcaattgtcactatccctttaagtgga |
2592101 |
T |
|
| Q |
198 |
tcataaaatctctcaattagtcctatg |
224 |
Q |
| |
|
||||| || |||||||||||||||||| |
|
|
| T |
2592100 |
tcatagaacctctcaattagtcctatg |
2592074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2672345 - 2672571
Alignment:
| Q |
1 |
gagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgccccatatgcaatattctcccttatggtaccaccaaacaa |
97 |
Q |
| |
|
||||||||| |||||| | ||| |||||||||||||||||||||||| |||||| | || |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
2672345 |
gagcatttgaagcctttgatgcctctataatctcactctcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaacaa |
2672444 |
T |
|
| Q |
98 |
tgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatcactaccatcaatcgtcactatcccttttattgga |
197 |
Q |
| |
|
|||||| |||||||||||||| | ||| || ||||| |||||||| |||||||| | ||||| || ||||| ||||| |||||||||||||| | ||| |
|
|
| T |
2672445 |
tgttggttcttgactcacaagggcaatgtgtttcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtggg |
2672544 |
T |
|
| Q |
198 |
tcataaaatctctcaattagtcctatg |
224 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
2672545 |
tcatagaatctctcaattagtcctatg |
2672571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 17870446 - 17870610
Alignment:
| Q |
60 |
ccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagatttta |
159 |
Q |
| |
|
||||||||||| || || |||||||| ||| | ||||||||| ||||| |||||||||| || || || |||| |||| |||| ||||| ||||||| |
|
|
| T |
17870446 |
ccatatgcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttatatgatttta |
17870545 |
T |
|
| Q |
160 |
tatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
224 |
Q |
| |
|
| | ||||||| || ||||| | ||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
17870546 |
tgtttgtaccatctattgtcacatttccttttattggatcatagaatctctctattaatcctatg |
17870610 |
T |
|
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