View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_54 (Length: 226)
Name: NF4154_low_54
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 6 - 166
Target Start/End: Complemental strand, 31942488 - 31942334
Alignment:
| Q |
6 |
aaaaggaagtaaagtttgattgaatggttcaatattattgtttgtcataggagcagaaacaggaagaggtaaaggaagcaaggttgttccaggaaagttc |
105 |
Q |
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| T |
31942488 |
aaaaggaagtaaactttgattgaatggttcaatattattgtttgtcataggaacagaaa------gaggtaaaggaagcaaggttgttccaggaaagttc |
31942395 |
T |
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| Q |
106 |
aaagtggatgttggagattcaagatcatcattggataacatcatagcatacatactatgca |
166 |
Q |
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| T |
31942394 |
aaagtggatgttggagattcaagatcatcattggataacatcatagcatacatactatgca |
31942334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 32001446 - 32001293
Alignment:
| Q |
7 |
aaaggaagtaaagtttgattgaatggttcaatattattgtttgtcataggagcagaaacaggaagaggtaaaggaagcaaggttgttccaggaaagttca |
106 |
Q |
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| T |
32001446 |
aaaggaagtaaactttgattgaatggttcaatattattgtttgtcataggaacagaaa------gaggtaaaggaagcaaggttgttccaggaaagttca |
32001353 |
T |
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| Q |
107 |
aagtggatgttggagattcaagatcatcattggataacatcatagcatacatactatgca |
166 |
Q |
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| T |
32001352 |
aagtggatgttggagattcaagatcatcattggataacatcatagcatacatactatgca |
32001293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 32004236 - 32004137
Alignment:
| Q |
62 |
aaacaggaagaggtaaaggaagcaaggttgttccaggaaagttcaaagtggatgttggagattcaaga---tcatcattggataacatcatagcatacat |
158 |
Q |
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| T |
32004236 |
aaacaggaagaggaagaggaagcagggttgttcccgggaagttcaaagtggatgtaggagattcaagattttcatcattggatgacatcataacatacat |
32004137 |
T |
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