View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4154_low_59 (Length: 212)

Name: NF4154_low_59
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4154_low_59
NF4154_low_59
[»] chr3 (9 HSPs)
chr3 (1-193)||(38869294-38869487)
chr3 (4-66)||(37681284-37681346)
chr3 (4-66)||(3806603-3806665)
chr3 (4-66)||(44177079-44177141)
chr3 (4-66)||(44183760-44183822)
chr3 (17-66)||(21301828-21301877)
chr3 (4-65)||(45648105-45648166)
chr3 (8-55)||(10613991-10614037)
chr3 (4-62)||(37980232-37980290)
[»] chr8 (9 HSPs)
chr8 (4-65)||(34331893-34331954)
chr8 (4-66)||(415114-415176)
chr8 (4-66)||(1657845-1657907)
chr8 (4-66)||(14031825-14031887)
chr8 (4-66)||(37402269-37402331)
chr8 (18-66)||(36801826-36801874)
chr8 (4-62)||(6335791-6335849)
chr8 (4-66)||(22808830-22808893)
chr8 (4-65)||(32554683-32554744)
[»] chr1 (4 HSPs)
chr1 (4-65)||(11462023-11462084)
chr1 (4-48)||(8050380-8050424)
chr1 (4-66)||(8028750-8028811)
chr1 (24-61)||(13188185-13188222)
[»] chr5 (4 HSPs)
chr5 (3-66)||(27263897-27263960)
chr5 (4-66)||(28394725-28394787)
chr5 (4-66)||(41879864-41879926)
chr5 (4-66)||(31172357-31172419)
[»] scaffold0035 (1 HSPs)
scaffold0035 (4-66)||(81762-81824)
[»] chr7 (6 HSPs)
chr7 (4-66)||(5096579-5096641)
chr7 (17-54)||(11485555-11485592)
chr7 (4-66)||(39753659-39753721)
chr7 (4-65)||(1762680-1762741)
chr7 (20-65)||(13861519-13861564)
chr7 (4-49)||(44549422-44549466)
[»] chr6 (5 HSPs)
chr6 (4-66)||(15960382-15960444)
chr6 (4-65)||(34672662-34672723)
chr6 (24-66)||(20469643-20469685)
chr6 (17-66)||(5493054-5493103)
chr6 (18-66)||(13846491-13846539)
[»] chr4 (2 HSPs)
chr4 (4-66)||(23315842-23315904)
chr4 (4-62)||(22160292-22160350)
[»] chr2 (8 HSPs)
chr2 (4-66)||(26966473-26966535)
chr2 (4-65)||(352304-352365)
chr2 (4-65)||(2383026-2383087)
chr2 (4-66)||(31522708-31522769)
chr2 (6-57)||(14706248-14706299)
chr2 (8-51)||(18295488-18295531)
chr2 (19-66)||(40324440-40324487)
chr2 (4-65)||(31525195-31525255)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 38869487 - 38869294
Alignment:
Q  1 taatatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaacctattaaattaacaatttaaagaatctatttaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38869487 taatatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaacctattaaattaacaatttaaagaatctatttaaa 38869388  T
Q  101 t-ttataaaatatannnnnnncaatggaaaagcttattttaaatttaaaaactaactcagatatttcacgaaattaaaaagataattagcaaat 193  Q
      ||| ||||||||       |||||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  38869387 acttaaaaaatatatttttttcaatggaaaaacttattttaaacttaaaaactaattcaaatatttcacgaaattaaaaagataattagcaaat 38869294  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 37681284 - 37681346
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||  ||| |||||||| |||||||||||||||||||||||||| ||||||||||    
T  37681284 tatatatgaaggggatggagattttgggctgaattttttataatttcaattatacccttaaac 37681346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 3806603 - 3806665
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  3806603 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaac 3806665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 44177141 - 44177079
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  44177141 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaac 44177079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 44183822 - 44183760
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||| ||||| ||||||||||    
T  44183822 tatatatgaagggaatagagagtttgggctgaattttttataattttaattatacccttaaac 44183760  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 21301877 - 21301828
Alignment:
Q  17 gatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||| |||||||||||||||||||  ||||| ||||||||||    
T  21301877 gatagagattttgggctgaattttttataattctaattatacccttaaac 21301828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 45648105 - 45648166
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaa 65  Q
    |||||||||||  |||| ||||||| |||| ||||||||||||||||||||| ||| |||||    
T  45648105 tatatatgaaggggatatagattttgggctaaattttttataatttcaattatacctttaaa 45648166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 10614037 - 10613991
Alignment:
Q  8 tatgaagatgatagagattttaggctgaattttttataatttcaatta 55  Q
    |||||||| |||| |||||||||||||||||||||||||||| |||||    
T  10614037 tatgaaga-gatatagattttaggctgaattttttataattttaatta 10613991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 37980232 - 37980290
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaaccctt 62  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||| ||||| ||||||    
T  37980232 tatatatgaagggaatagagactttgggctgaattttttataattttaattataccctt 37980290  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 34331893 - 34331954
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaa 65  Q
    |||||||||||  |||||||||||| |||| ||||||||||||||||||||| |||||||||    
T  34331893 tatatatgaaggggatagagattttgggctaaattttttataatttcaattatacccttaaa 34331954  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 415114 - 415176
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  415114 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaac 415176  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 1657845 - 1657907
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  1657845 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaac 1657907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 14031887 - 14031825
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  14031887 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaac 14031825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 37402331 - 37402269
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  37402331 tatatatgaaggaaatagagactttgggctgaattttttataatttcaattatacccttaaac 37402269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 36801826 - 36801874
Alignment:
Q  18 atagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  36801826 atagagactttgggctgaattttttataatttcaattatacccttaaac 36801874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 6335791 - 6335849
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaaccctt 62  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||    
T  6335791 tatatatgaagggaatagagactttgggctgaattttttataatttcaattataccctt 6335849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 22808893 - 22808830
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaatttttt-ataatttcaattaaacccttaaac 66  Q
    |||||||||||  ||| |||||||| | ||||||||||| ||||||||||||| ||||||||||    
T  22808893 tatatatgaaggggattgagattttggactgaatttttttataatttcaattatacccttaaac 22808830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 32554683 - 32554744
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaa 65  Q
    |||||||||||| |||| ||||||| |  |  |||||||||||||||||||| |||||||||    
T  32554683 tatatatgaagaggatatagattttggattagattttttataatttcaattatacccttaaa 32554744  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 11462084 - 11462023
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaa 65  Q
    |||||||||||  ||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  11462084 tatatatgaaggggatagagattttgagctgaattttttataatttcaattatacccttaaa 11462023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 8050424 - 8050380
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatt 48  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||    
T  8050424 tatatatgaaggggatagagattttaggttgaattttttataatt 8050380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 8028811 - 8028750
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||| ||||||||||||||||||| ||||||||||    
T  8028811 tatatatgaagggaatagagactttgggctga-ttttttataatttcaattatacccttaaac 8028750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 13188222 - 13188185
Alignment:
Q  24 attttaggctgaattttttataatttcaattaaaccct 61  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  13188222 attttgggctgaattttttataatttcaattataccct 13188185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 27263960 - 27263897
Alignment:
Q  3 atatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    ||||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  27263960 atatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaac 27263897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 28394787 - 28394725
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  28394787 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaac 28394725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 41879926 - 41879864
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  41879926 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaac 41879864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 31172419 - 31172357
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   || |||| ||| |||||||||||||||||||||||||| ||||| ||||    
T  31172419 tatatatgaagggaatcgagactttgggctgaattttttataatttcaattataccctcaaac 31172357  T

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Target: scaffold0035 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 81762 - 81824
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  81762 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaac 81824  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 5096641 - 5096579
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  5096641 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaac 5096579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 11485555 - 11485592
Alignment:
Q  17 gatagagattttaggctgaattttttataatttcaatt 54  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11485555 gatagagattttaggctgaattttttataatttcaatt 11485592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 39753721 - 39753659
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||| ||||    
T  39753721 tatatatgaagggaatagagactttgggctgaattttttataatttcaattataccctcaaac 39753659  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 1762741 - 1762680
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaa 65  Q
    ||||||| |||  |||| ||||||| ||||| ||||||||||||| |||||| |||||||||    
T  1762741 tatatatcaagtggataaagattttgggctgtattttttataattccaattatacccttaaa 1762680  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 13861564 - 13861519
Alignment:
Q  20 agagattttaggctgaattttttataatttcaattaaacccttaaa 65  Q
    ||||||||| ||||||| ||||||||||| |||||| |||||||||    
T  13861564 agagattttgggctgaaatttttataattccaattatacccttaaa 13861519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 44549466 - 44549422
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataattt 49  Q
    |||||||||||  |||| ||||||||||||||||||||||||||||    
T  44549466 tatatatgaagg-gatatagattttaggctgaattttttataattt 44549422  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 15960444 - 15960382
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    ||||||||||   |||||| ||||| |||||||||||||||||||||||||| ||||||||||    
T  15960444 tatatatgaatgagatagaaattttgggctgaattttttataatttcaattatacccttaaac 15960382  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 34672723 - 34672662
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaa 65  Q
    |||||||||||| ||| |||||||| | ||||||||||||||||| |||||| |||||||||    
T  34672723 tatatatgaagaggattgagatttttgactgaattttttataattccaattatacccttaaa 34672662  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 20469685 - 20469643
Alignment:
Q  24 attttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    
T  20469685 attttaggctgaattttttataattccaattatacccttaaac 20469643  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 5493103 - 5493054
Alignment:
Q  17 gatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    ||||| |||||| |||||||||||||||||||  ||||| ||||||||||    
T  5493103 gatagggattttgggctgaattttttataattataattatacccttaaac 5493054  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 13846491 - 13846539
Alignment:
Q  18 atagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    ||||||| ||| |||||||||||||||||||| ||||| ||| ||||||    
T  13846491 atagagactttgggctgaattttttataatttaaattataccattaaac 13846539  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 23315842 - 23315904
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  23315842 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaac 23315904  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 22160292 - 22160350
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaaccctt 62  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| ||||||    
T  22160292 tatatatgaagggaatagagactttgggctgaattttttataatttcaattataccctt 22160350  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 26966535 - 26966473
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||| ||| |||||||| | ||||||||||||||||| |||||| ||||||||||    
T  26966535 tatatatgaagaggatcgagatttttgactgaattttttataattccaattatacccttaaac 26966473  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 352304 - 352365
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaa 65  Q
    |||||||||||  |||||||||||| |||| |||||||||||||| |||||| |||||||||    
T  352304 tatatatgaaggggatagagattttgggctaaattttttataattccaattatacccttaaa 352365  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 2383026 - 2383087
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaa 65  Q
    |||||||||||   ||||||| ||| |||||||||||||||||||||||||| |||||||||    
T  2383026 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaa 2383087  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 31522708 - 31522769
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||||||||  ||||||||||||||| ||| |||||||||||| |||||| ||||||||||    
T  31522708 tatatatgaaggggatagagattttaggttga-ttttttataattacaattatacccttaaac 31522769  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 14706248 - 14706299
Alignment:
Q  6 tatatgaagatgatagagattttaggctgaattttttataatttcaattaaa 57  Q
    |||||||||  ||| |||||||| ||||||||||||||||||| ||||||||    
T  14706248 tatatgaaggagattgagattttgggctgaattttttataattccaattaaa 14706299  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 18295531 - 18295488
Alignment:
Q  8 tatgaagatgatagagattttaggctgaattttttataatttca 51  Q
    |||||||  |||||||||||| ||||||||||||||||||||||    
T  18295531 tatgaagtggatagagattttgggctgaattttttataatttca 18295488  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 40324487 - 40324440
Alignment:
Q  19 tagagattttaggctgaattttttataatttcaattaaacccttaaac 66  Q
    |||||| ||| ||||||| |||||||||||||||||| ||||||||||    
T  40324487 tagagactttgggctgaaatttttataatttcaattatacccttaaac 40324440  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 31525195 - 31525255
Alignment:
Q  4 tatatatgaagatgatagagattttaggctgaattttttataatttcaattaaacccttaaa 65  Q
    |||||||||||  ||||||||||||| | ||| |||||||||||| |||||| |||||||||    
T  31525195 tatatatgaaggggatagagattttaagttga-ttttttataattccaattatacccttaaa 31525255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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