View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_6 (Length: 544)
Name: NF4154_low_6
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 42657092 - 42656890
Alignment:
| Q |
17 |
agatctgacatagaaaatgcaagctatatctattgtaagaaaatgtttttcctaataaccgttggctaatttcatacatttgtctttatcatgttttttc |
116 |
Q |
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| T |
42657092 |
agatctgacatagaaaatgcaagctatatctattgtaagaaaatgtttttcctaataaccgttggctaatttcatacatttgtctttatcatgttttttc |
42656993 |
T |
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| Q |
117 |
ccaacacagtgtgagtctaagtctaacgacccccttcccttctacttcaaattaagaagctatagggctgtgtactaccctacctagcctattacaagtc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42656992 |
ccaacacagtgtgagtctaagtctaacgacccccttcccttctacttcaaattaagaagctatagggctgtgtactaccctacctagcctattacaagtc |
42656893 |
T |
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| Q |
217 |
aga |
219 |
Q |
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||| |
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| T |
42656892 |
aga |
42656890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 380 - 534
Target Start/End: Complemental strand, 42656634 - 42656479
Alignment:
| Q |
380 |
gtatttttaggaaattgnnnnnnnacataatccactgtaaataaaattgacaactgta-tttgtacgtactgcttgttttgaagctgacaacttataata |
478 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
42656634 |
gtatttttaggaaattgtttttttacataatccactgtaaataaaattgacaactgtaatttgtacgtaccgcttgttttgaagctgacaacttatcata |
42656535 |
T |
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| Q |
479 |
tagagacaaaaatgataaaagacaaagtacatagtaataaattagatcacctatct |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42656534 |
tagagacaaaaatgataaaagacaaagtacatagtaataaattagatcacctatct |
42656479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 42656829 - 42656782
Alignment:
| Q |
276 |
caacagtgtataaccaaaaataataattccatagtatgattattgttt |
323 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42656829 |
caacagtgtataaccaaaaataataattcaatagtatgattattgttt |
42656782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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