View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4154_low_61 (Length: 202)
Name: NF4154_low_61
Description: NF4154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4154_low_61 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 15545605 - 15545806
Alignment:
| Q |
1 |
cttcaagatcatagtttaatctacaaatcagagaaaatgtatgcaactagacttctttccatgtacaaaatgaatcctagtgctctttcagatccaccac |
100 |
Q |
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| T |
15545605 |
cttcaagatcatagtttaatctacaaatcagagaaaatgtatgcaacaagacttctttccatgtacaaaatgaatcctagtgcactttcagacccaccac |
15545704 |
T |
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| Q |
101 |
catcagggccaaattcaagttatcttgtgatattggatgaggaagctcaaacttactgctgttttggtttgtgcaaggaccatagaatcaagaattttcc |
200 |
Q |
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| T |
15545705 |
catcaggaccaaattcaagttatcttgtgatattggatgaagaagctcaaacttactgctgttttggtttgtgcaaggaccatagaatcaagaattttcc |
15545804 |
T |
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| Q |
201 |
ta |
202 |
Q |
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|| |
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| T |
15545805 |
ta |
15545806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 15528168 - 15528368
Alignment:
| Q |
1 |
cttcaagatcatagtttaatctacaaatcagagaaaatgtatgcaactagacttctttccatgtacaaaatgaatcctagtgctctttcagatccaccac |
100 |
Q |
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| T |
15528168 |
cttcaagatcataatttaatctacaaatcagtgaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgctctttcagacccaccac |
15528267 |
T |
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| Q |
101 |
catcagggccaaattcaagttatcttgtgatattggatgaggaagctcaaacttactgctgttttggtttgtgcaaggaccatagaatcaagaattttcc |
200 |
Q |
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| T |
15528268 |
catcggggccaaattcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtccaaagacaatagaatcaagaattttcc |
15528367 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
15528368 |
t |
15528368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 15517754 - 15517947
Alignment:
| Q |
8 |
atcatagtttaatctacaaatcagagaaaatgtatgcaactagacttctttccatgtacaaaatgaatcctagtgctctttcagatccaccaccatcagg |
107 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| || |
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| T |
15517754 |
atcatagtttaatttacaaatcagagaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgcactttcagacccaccaccatcggg |
15517853 |
T |
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| Q |
108 |
gccaaattcaagttatcttgtgatattggatgaggaagctcaaacttactgctgttttggtttgtgcaaggaccatagaatcaagaattttcct |
201 |
Q |
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| T |
15517854 |
gccaaattcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtgcaaggatactagaatcaagaattttcct |
15517947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 15522044 - 15522237
Alignment:
| Q |
8 |
atcatagtttaatctacaaatcagagaaaatgtatgcaactagacttctttccatgtacaaaatgaatcctagtgctctttcagatccaccaccatcagg |
107 |
Q |
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||||||||||||| || ||||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15522044 |
atcatagtttaatttataaatcggtgaaaatgtatgcaacaagacttctttccatgtacaaaaggaatcctagtgctctttcagatccaccaccatcagg |
15522143 |
T |
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| Q |
108 |
gccaaattcaagttatcttgtgatattggatgaggaagctcaaacttactgctgttttggtttgtgcaaggaccatagaatcaagaattttcct |
201 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| || ||| |||||||||||||||||||| |
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| T |
15522144 |
accaaattcaagttatcttgtgatattggatgaagtagctcaaacttactcttgttttggtttgtcaaaagacaatagaatcaagaattttcct |
15522237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 15550370 - 15550491
Alignment:
| Q |
36 |
aatgtatgcaactagacttctttccatgtacaaaatgaatcctagtgctctttcagatccaccaccatcagggccaaattcaagttatcttgtgatattg |
135 |
Q |
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| T |
15550370 |
aatgtatgcagcaagacttctttccatgtataaaaggaaccctagtgctctttcagatcaaccaccatcaggtccaaattccggttatcttgtaatattg |
15550469 |
T |
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| Q |
136 |
gatgaggaagctcaaacttact |
157 |
Q |
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| T |
15550470 |
gatgaagaagctcaaacttact |
15550491 |
T |
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