View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4155_high_17 (Length: 266)
Name: NF4155_high_17
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4155_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 1121632 - 1121400
Alignment:
| Q |
11 |
cacagaccgagcaacccaactactttcgtccaaatcttcccaaaaaacaaacaatataaaacaagatgttgtgcgatcccattaaatacacattcgttta |
110 |
Q |
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| T |
1121632 |
cacaaaccgagcaacccaactactttcgtccaaatcttcccaaaaaacaaacaatataaaacaagatgttgtgcgctcccattaaatacacattcgttta |
1121533 |
T |
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| Q |
111 |
cacacaaaaaatattccaattgattaaaacctagtttgagtagattaccccttgtttctaatcaatcaatgtgaagcctctactctagtaaagagattga |
210 |
Q |
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| T |
1121532 |
caca---aaaatattccaattgattaaaacctagtttgagtagattaccccttgtttctaatcaatcaatgtgaagcctctactctagtaaagagattga |
1121436 |
T |
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| Q |
211 |
ttgatacaccaatttgttccatgaaacattgcttat |
246 |
Q |
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| T |
1121435 |
ttgatacaccaatctgttccatgaaacattgcttat |
1121400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 52 - 244
Target Start/End: Complemental strand, 1117071 - 1116881
Alignment:
| Q |
52 |
aaaaaacaaacaatataaaacaagatgttgtgcgatcccattaaatacacattcgtttacacacaaaaaatattccaattgattaaaacctagtttgagt |
151 |
Q |
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| T |
1117071 |
aaaaaaaaaacaataaaaaataaaatgttgtgcgatcccattaaatacacattcgttgacaca--aacaatactccaattgattaaaatcacgtttgagt |
1116974 |
T |
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| Q |
152 |
agattaccccttgtttctaatcaatcaatgtgaagcctctactctagtaaagagattgattgatacaccaatttgttccatgaaacattgctt |
244 |
Q |
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| T |
1116973 |
agattactttttgttgctaatcaatcattgtgaagcctctactcaagtaaagagattgtttgatacaccaatttgttcgatgaaacattgctt |
1116881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 1095591 - 1095440
Alignment:
| Q |
26 |
ccaactactttcgtccaaatcttcccaaaaaacaaacaatataaaacaagatgttgtgcgatcccattaaatacacattcgtttacacacaaaaaatatt |
125 |
Q |
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| T |
1095591 |
ccaactactttcgtctaaaccttcc-ataaaataaagaacaaaaaacaagatgttgtgcgctctcattaaatacacattcgttgacacacaaacaatact |
1095493 |
T |
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| Q |
126 |
ccaattgattaaaacctagtttgagtagattaccccttgtttctaatcaatca |
178 |
Q |
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| T |
1095492 |
ccaattgattaaagccatgcttgagtagattaccccttgtttctaatcaatca |
1095440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 1067498 - 1067449
Alignment:
| Q |
197 |
agtaaagagattgattgatacaccaatttgttccatgaaacattgcttat |
246 |
Q |
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| T |
1067498 |
agtaaagaggttgtatgagacaccaatctgttccatgaaacattgcttat |
1067449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 8115932 - 8115843
Alignment:
| Q |
157 |
accccttgtttctaatcaatcaatgtgaagcctctactctagtaaagagattgattgatacaccaatttgttccatgaaacattgcttat |
246 |
Q |
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| T |
8115932 |
accccttgttgctaatcaatcattgtgaagcctctactcaagtaaagagactgtttgatgcaccaatttgttccatgaaacattgcttat |
8115843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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