View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4155_high_18 (Length: 250)
Name: NF4155_high_18
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4155_high_18 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 31063397 - 31063630
Alignment:
| Q |
17 |
ctgtgaatacccaaggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31063397 |
ctgtgaatacccaaggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaa |
31063496 |
T |
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| Q |
117 |
tgcacctattgaaacctcatcagtaaaaatttgttcagaatttgtactagattggcccccagcagaaacagaaattatatcaacaccatcatcaattgct |
216 |
Q |
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|||||||||||||||||| || |||||||||| ||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
31063497 |
tgcacctattgaaacctcgtcggtaaaaatttcttcagaatttgtactagatgggcctccagcagaaacagatattatgtcaacaccatcatcaattgct |
31063596 |
T |
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| Q |
217 |
tgatcaatatcagataatacgtcagcaccaaagc |
250 |
Q |
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| T |
31063597 |
tgatcaatagcagataatacatcagcaccaaagc |
31063630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 31108486 - 31108717
Alignment:
| Q |
19 |
gtgaatacccaaggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaatg |
118 |
Q |
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| T |
31108486 |
gtgaacacccatggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaatg |
31108585 |
T |
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| Q |
119 |
cacctattgaaacctcatcagtaaaaatttgttcagaatttgtactagattggcccccagcagaaacagaaattatatcaacaccatcatcaattgcttg |
218 |
Q |
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| T |
31108586 |
cacctattgaaatctcgtcagtaaaaatttcttcagaatttgtactagatgggcctccagcagaaacagatattatgtcaacaccatcatcaattgcttg |
31108685 |
T |
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| Q |
219 |
atcaatatcagataatacgtcagcaccaaagc |
250 |
Q |
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| T |
31108686 |
atcaatagcagataatacatcagcaccaaagc |
31108717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 31146236 - 31146467
Alignment:
| Q |
19 |
gtgaatacccaaggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaatg |
118 |
Q |
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||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
31146236 |
gtgaacacccatggagcaacattagtaacacttccaggggtaggtccttcatttccagccgatgcaactaataatatatttctagcaagtgcatgaaatg |
31146335 |
T |
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| Q |
119 |
cacctattgaaacctcatcagtaaaaatttgttcagaatttgtactagattggcccccagcagaaacagaaattatatcaacaccatcatcaattgcttg |
218 |
Q |
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|||||||||||| ||||||||||||||| ||||| ||||||| ||| || ||| ||||| ||||||||||| | |||| |||| || | ||||||||| |
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| T |
31146336 |
cacctattgaaatctcatcagtaaaaataacttcaggatttgtattaggtttgcctccagccgaaacagaaatcaaatcagcaccgtcgtaaattgcttg |
31146435 |
T |
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| Q |
219 |
atcaatatcagataatacgtcagcaccaaagc |
250 |
Q |
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| T |
31146436 |
atcaatagcagctaatacatcggcaccaaagc |
31146467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 31164062 - 31164293
Alignment:
| Q |
19 |
gtgaatacccaaggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaatg |
118 |
Q |
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||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
31164062 |
gtgaacacccatggagcaacattagtaacacttccaggggtaggtccttcatttccagccgatgcaactaataatatatttctagcaagtgcatgaaatg |
31164161 |
T |
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| Q |
119 |
cacctattgaaacctcatcagtaaaaatttgttcagaatttgtactagattggcccccagcagaaacagaaattatatcaacaccatcatcaattgcttg |
218 |
Q |
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|||||||||||| ||||||||||||||| ||||| ||||||| ||| || ||| ||||| ||||||||||| | |||| |||| || | ||||||||| |
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| T |
31164162 |
cacctattgaaatctcatcagtaaaaataacttcaggatttgtattaggtttgcctccagccgaaacagaaatcaaatcagcaccgtcgtaaattgcttg |
31164261 |
T |
|
| Q |
219 |
atcaatatcagataatacgtcagcaccaaagc |
250 |
Q |
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||||||| ||| |||||| || ||||| |||| |
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| T |
31164262 |
atcaatagcagctaatacatcggcaccgaagc |
31164293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 31050934 - 31051161
Alignment:
| Q |
19 |
gtgaatacccaaggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaatg |
118 |
Q |
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||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||| |||| | ||| ||||||| |
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| T |
31050934 |
gtgaacacccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagcgaatgcctgaaatg |
31051033 |
T |
|
| Q |
119 |
cacctattgaaacctcatcagtaaaaatttgttcagaatttgtactagattggcccccagcagaaacagaaattatatcaacaccatcatcaattgcttg |
218 |
Q |
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|||||||||||| ||||| |||||||||| |||| |||||| ||||||| |||| ||| ||||||| || |||||||||||||||||| ||| ||||| |
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| T |
31051034 |
cacctattgaaatttcatcggtaaaaatttcttcaaaatttgaactagatcggcctccaacagaaactgagattatatcaacaccatcactaatggcttg |
31051133 |
T |
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| Q |
219 |
atcaatatcagataatacgtcagcacca |
246 |
Q |
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||| ||| |||||||||| ||||||||| |
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| T |
31051134 |
atcgatagcagataatacatcagcacca |
31051161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 31201770 - 31201642
Alignment:
| Q |
18 |
tgtgaatacccaaggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaat |
117 |
Q |
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|||||||||||| ||||| ||||| |||||||||||| ||| ||||||||||| || ||||| |||||||||||||||||||||| ||||||||| ||| |
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| T |
31201770 |
tgtgaatacccatggagctacattcacaacacttccaccggttggtccttcattacctgcagaggcaactaataatatatttctagaaagtgcatggaat |
31201671 |
T |
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| Q |
118 |
gcacctattgaaacctcatcagtaaaaat |
146 |
Q |
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| T |
31201670 |
gctccaattgaaacctcgtctgtaaaaat |
31201642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 31201598 - 31201538
Alignment:
| Q |
190 |
attatatcaacaccatcatcaattgcttgatcaatatcagataatacgtcagcaccaaagc |
250 |
Q |
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|||||||||||||||||| ||| |||||||||||| ||| |||||| || |||||||||| |
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| T |
31201598 |
attatatcaacaccatcactaatggcttgatcaatagcagctaatacatcggcaccaaagc |
31201538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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