View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4155_high_20 (Length: 234)
Name: NF4155_high_20
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4155_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 49299463 - 49299564
Alignment:
| Q |
96 |
ataaccatgataatgtatatgtctctccgcagctttctaatcaaccataacaatacgtaataagcataatgaatgtaagctggaagaggacaaggtttat |
195 |
Q |
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| T |
49299463 |
ataaccatgataatgtatatgtctctccgcagctttctaatcaaccataacaatacgtaataagcataatgaatgt-agctggaagaggacaaggtttat |
49299561 |
T |
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| Q |
196 |
gat |
198 |
Q |
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||| |
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| T |
49299562 |
gat |
49299564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 49299416 - 49299464
Alignment:
| Q |
7 |
tcttttactaatagaaaaaaccaaggagacgttaattcggttggtgcat |
55 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49299416 |
tcttttactaatagaaaaaaccaaggagacgttaattcggttggtgcat |
49299464 |
T |
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