View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4155_high_9 (Length: 427)

Name: NF4155_high_9
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4155_high_9
NF4155_high_9
[»] chr2 (3 HSPs)
chr2 (4-411)||(1614885-1615286)
chr2 (4-379)||(24455839-24456207)
chr2 (376-411)||(24455414-24455449)
[»] chr8 (3 HSPs)
chr8 (7-379)||(43228075-43228439)
chr8 (158-357)||(14839131-14839323)
chr8 (383-411)||(43227634-43227662)
[»] chr3 (2 HSPs)
chr3 (150-381)||(49234306-49234533)
chr3 (150-379)||(49233735-49233959)
[»] chr1 (3 HSPs)
chr1 (150-379)||(50862518-50862741)
chr1 (326-379)||(47723984-47724037)
chr1 (326-379)||(47730976-47731029)
[»] chr7 (1 HSPs)
chr7 (158-357)||(27962367-27962559)


Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 4 - 411
Target Start/End: Original strand, 1614885 - 1615286
Alignment:
Q  4 ataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaac 103  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1614885 ataagaaccaagagaacataagaaacaatctcaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaac 1614984  T
Q  104 aggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccg 203  Q
    |||||||||||||||||||||||||||||||||||||         |||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  1614985 aggagaacaatacaaacagccggttaaaaagacaatatttttttt-gtaaattgagacaaaacgcatgaagacaaaggcaaagagaagaaaataaaaccg 1615083  T
Q  204 atacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgc 303  Q
    ||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615084 atacggtgcagt-----tgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgc 1615178  T
Q  304 actacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgcatatatagtcattcttctttcaagc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615179 actacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgcatatatagtcattcttctttcaagc 1615278  T
Q  404 ttcacaat 411  Q
    ||||||||    
T  1615279 ttcacaat 1615286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 4 - 379
Target Start/End: Complemental strand, 24456207 - 24455839
Alignment:
Q  4 ataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaac 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  |||    
T  24456207 ataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactatagagccaaactacaacaacctattcagaaaaactaac 24456108  T
Q  104 aggagaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacaca-tgaagacaaaggcaaagagaagaaaataaaacc 202  Q
    ||||||||||||||||||||| |||||||||||||||         ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  24456107 aggagaacaatacaaacagccagttaaaaagacaata-atttttttgtaaattgagccaaaacacacagaaaacaaaggcaaagagaagaaaataaaacc 24456009  T
Q  203 gatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctg 302  Q
    |||| |     ||||||||| | |  | |||||||||||||||||  |||| |||||||| ||||||| |||||||||||||||||||||||||||| ||    
T  24456008 gatatg-----gtgcagctggacc--acagagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgctgttg 24455916  T
Q  303 cactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 379  Q
    || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  24455915 cattacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgca 24455839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 411
Target Start/End: Complemental strand, 24455449 - 24455414
Alignment:
Q  376 tgcatatatagtcattcttctttcaagcttcacaat 411  Q
    ||||||||||||||||||||||||||||||||||||    
T  24455449 tgcatatatagtcattcttctttcaagcttcacaat 24455414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 7 - 379
Target Start/End: Complemental strand, 43228439 - 43228075
Alignment:
Q  7 agaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaacagg 106  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43228439 agaaccaagagaacataagaaactatcccaaagaaaacaaaccaaaatcaactacactaaagagccaaactacaacaacctattctaaaaaagcaacagg 43228340  T
Q  107 agaacaatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgata 206  Q
    ||| |||||||||||||| |||||||||||| ||         |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  43228339 agaccaatacaaacagccagttaaaaagacagta-ttttttttgtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaaaccgata 43228241  T
Q  207 cggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcact 306  Q
     |      |||||||| |||  | ||||| |||||||||| | |||| ||||||| ||||| |  ||| ||||||| | | |||||||||||||||||||    
T  43228240 tg-----ttgcagctggaac--acagagacaaatcagaacgcagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcact 43228148  T
Q  307 acattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 379  Q
    |||||||||||||||  |||| ||| |||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  43228147 acattagtccacatgccgaaagccaactctaaattatgcagaaaatcaccccgatctcactccaaattatgca 43228075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 357
Target Start/End: Complemental strand, 14839323 - 14839131
Alignment:
Q  158 agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa 257  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||    
T  14839323 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa 14839231  T
Q  258 aaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 357  Q
    ||||  || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  14839230 aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 14839131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 411
Target Start/End: Complemental strand, 43227662 - 43227634
Alignment:
Q  383 atagtcattcttctttcaagcttcacaat 411  Q
    |||||||||||||||||||||||||||||    
T  43227662 atagtcattcttctttcaagcttcacaat 43227634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 150 - 381
Target Start/End: Original strand, 49234306 - 49234533
Alignment:
Q  150 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 249  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| ||||||||||||     
T  49234306 gtaaattgagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcagaacaca 49234400  T
Q  250 gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgc-aga 348  Q
    |||| |||||||||||||||  ||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||    
T  49234401 gggaggaaaaaatgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccagctctaaattatgcaaga 49234500  T
Q  349 aaatcacctcgatctctctccaaactatgcata 381  Q
    |||||||||||||||| ||||||| ||||||||    
T  49234501 aaatcacctcgatctcgctccaaattatgcata 49234533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 150 - 379
Target Start/End: Original strand, 49233735 - 49233959
Alignment:
Q  150 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 249  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| |||||| |||||     
T  49233735 gtaaattaagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcaaaacaca 49233829  T
Q  250 gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa 349  Q
    |||| |||| ||||||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  49233830 gggaggaaagaatgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaa 49233929  T
Q  350 aatcacctcgatctctctccaaactatgca 379  Q
    ||||||||||||||| ||||||| ||||||    
T  49233930 aatcacctcgatctcgctccaaattatgca 49233959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 150 - 379
Target Start/End: Complemental strand, 50862741 - 50862518
Alignment:
Q  150 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 249  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||  ||| | ||||||     || |||| ||| ||| ||||||||||||     
T  50862741 gtaaattga-ccaaaacacatgaagaccaaggcaaagagaagaaattaaaactaatatgttgcagt-----tggaacacaaatagacaaatcagaacaca 50862648  T
Q  250 gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa 349  Q
    |||| ||||||| |||||||  || |||||||| ||||||| || ||||| | |||||||||||||||||||  ||||| ||||||||||||||||||||    
T  50862647 gggaggaaaaaacgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcagctctaaattatgcagaa 50862548  T
Q  350 aatcacctcgatctctctccaaactatgca 379  Q
    ||||||||||||||| ||||||| ||||||    
T  50862547 aatcacctcgatctcgctccaaattatgca 50862518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 47724037 - 47723984
Alignment:
Q  326 aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 379  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  47724037 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca 47723984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 47731029 - 47730976
Alignment:
Q  326 aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 379  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  47731029 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca 47730976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 357
Target Start/End: Original strand, 27962367 - 27962559
Alignment:
Q  158 agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa 257  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||    
T  27962367 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa 27962459  T
Q  258 aaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 357  Q
    ||||  || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  27962460 aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 27962559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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