View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4155_low_12 (Length: 369)

Name: NF4155_low_12
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4155_low_12
NF4155_low_12
[»] chr8 (8 HSPs)
chr8 (109-304)||(39371548-39371731)
chr8 (305-354)||(39371139-39371188)
chr8 (17-53)||(17103325-17103361)
chr8 (17-52)||(25148209-25148244)
chr8 (17-52)||(27022207-27022242)
chr8 (18-51)||(39371793-39371826)
chr8 (17-45)||(12827129-12827157)
chr8 (17-53)||(31283519-31283555)
[»] scaffold0499 (1 HSPs)
scaffold0499 (17-53)||(1918-1954)
[»] scaffold0040 (1 HSPs)
scaffold0040 (17-53)||(2077-2113)
[»] chr5 (2 HSPs)
chr5 (17-53)||(17445322-17445358)
chr5 (17-52)||(21883953-21883988)
[»] chr2 (3 HSPs)
chr2 (16-52)||(5399685-5399721)
chr2 (18-53)||(11389727-11389762)
chr2 (18-53)||(11406388-11406423)
[»] chr6 (1 HSPs)
chr6 (16-45)||(7912120-7912149)
[»] chr4 (1 HSPs)
chr4 (16-45)||(13266328-13266357)
[»] scaffold0217 (1 HSPs)
scaffold0217 (17-53)||(553-589)
[»] chr7 (4 HSPs)
chr7 (17-53)||(7646658-7646694)
chr7 (17-45)||(26419110-26419138)
chr7 (17-53)||(34405458-34405494)
chr7 (17-64)||(42515787-42515835)
[»] chr1 (3 HSPs)
chr1 (17-45)||(20053955-20053983)
chr1 (17-45)||(46693610-46693638)
chr1 (17-45)||(50002582-50002610)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 109 - 304
Target Start/End: Complemental strand, 39371731 - 39371548
Alignment:
Q  109 ctataaaatgttaacaaaacaaaccaggaatattttggtgctagcctcgttttcaaaaaacttgctccttgggaaaaaataccattgcgtcccattaaca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39371731 ctataaaatgttaacaaaacaaaccaggaatattttggtgctagcctcgttttcaaaaaacttgctccttgggaaaaaataccattgcgtcccattaaca 39371632  T
Q  209 ggtagagctccttcgggtacctcacagataaagttaaatccaagctgcatccttaaaggcttcccatttatctctggaaggaagaattactcttac 304  Q
    ||||||||||||||            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39371631 ggtagagctccttc------------gataaagttaaatacaagctgcatccttaaaggcttcccatttatctctggaaggaagaattcctcttac 39371548  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 39371188 - 39371139
Alignment:
Q  305 taaatcagttattgaacaattcgcatttacccgacgatgtcttcaaatat 354  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  39371188 taaatcagttattgaacaattcgcatttacccgatgatgtcctcaaatat 39371139  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 17103325 - 17103361
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatcttaaaagt 53  Q
    ||||||||||||||||||||||||||||| |||||||    
T  17103325 gtgttggtttgtggggtcagtcgacaatcctaaaagt 17103361  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 25148209 - 25148244
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatcttaaaag 52  Q
    ||||||||||||||||||||||||||||| ||||||    
T  25148209 gtgttggtttgtggggtcagtcgacaatcctaaaag 25148244  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 27022242 - 27022207
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatcttaaaag 52  Q
    ||||||||||||||||||||||||||||| ||||||    
T  27022242 gtgttggtttgtggggtcagtcgacaatcctaaaag 27022207  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 39371826 - 39371793
Alignment:
Q  18 tgttggtttgtggggtcagtcgacaatcttaaaa 51  Q
    |||| |||||||||||||||||||||||||||||    
T  39371826 tgtttgtttgtggggtcagtcgacaatcttaaaa 39371793  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 12827157 - 12827129
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatc 45  Q
    |||||||||||||||||||||||||||||    
T  12827157 gtgttggtttgtggggtcagtcgacaatc 12827129  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 31283555 - 31283519
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatcttaaaagt 53  Q
    |||||||||||||||||||||||||||| || |||||    
T  31283555 gtgttggtttgtggggtcagtcgacaatgttgaaagt 31283519  T

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Target: scaffold0499 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 1954 - 1918
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatcttaaaagt 53  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1954 gtgttggtttgtggggtcagtcgacaatcctaaaagt 1918  T

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Target: scaffold0040 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 2113 - 2077
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatcttaaaagt 53  Q
    ||||||||||||||||||||||||||||| |||||||    
T  2113 gtgttggtttgtggggtcagtcgacaatcctaaaagt 2077  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 17445358 - 17445322
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatcttaaaagt 53  Q
    ||||||||||||||||||||||||||||| |||||||    
T  17445358 gtgttggtttgtggggtcagtcgacaatcctaaaagt 17445322  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 21883988 - 21883953
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatcttaaaag 52  Q
    ||||||||||||||||||||||||||||||| ||||    
T  21883988 gtgttggtttgtggggtcagtcgacaatcttgaaag 21883953  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 5399721 - 5399685
Alignment:
Q  16 tgtgttggtttgtggggtcagtcgacaatcttaaaag 52  Q
    |||||||||||||||||||||||||||||| ||||||    
T  5399721 tgtgttggtttgtggggtcagtcgacaatcctaaaag 5399685  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 11389727 - 11389762
Alignment:
Q  18 tgttggtttgtggggtcagtcgacaatcttaaaagt 53  Q
    |||||||||||||||||||||||||||| |||||||    
T  11389727 tgttggtttgtggggtcagtcgacaatcctaaaagt 11389762  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 11406388 - 11406423
Alignment:
Q  18 tgttggtttgtggggtcagtcgacaatcttaaaagt 53  Q
    |||||||||||||||||||||||||||| |||||||    
T  11406388 tgttggtttgtggggtcagtcgacaatcctaaaagt 11406423  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 7912120 - 7912149
Alignment:
Q  16 tgtgttggtttgtggggtcagtcgacaatc 45  Q
    ||||||||||||||||||||||||||||||    
T  7912120 tgtgttggtttgtggggtcagtcgacaatc 7912149  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 13266328 - 13266357
Alignment:
Q  16 tgtgttggtttgtggggtcagtcgacaatc 45  Q
    ||||||||||||||||||||||||||||||    
T  13266328 tgtgttggtttgtggggtcagtcgacaatc 13266357  T

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Target: scaffold0217 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 553 - 589
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatcttaaaagt 53  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  553 gtgttggtttgtggggtcagtcggcaatcctaaaagt 589  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 7646658 - 7646694
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatcttaaaagt 53  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  7646658 gtgttggtttgtggggttagtcgacaatcctaaaagt 7646694  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 26419138 - 26419110
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatc 45  Q
    |||||||||||||||||||||||||||||    
T  26419138 gtgttggtttgtggggtcagtcgacaatc 26419110  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 34405494 - 34405458
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatcttaaaagt 53  Q
    |||||| |||||||||||||||||||||| |||||||    
T  34405494 gtgttgatttgtggggtcagtcgacaatcctaaaagt 34405458  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 42515787 - 42515835
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatcttaaaagt-ggatgttacat 64  Q
    ||||||||||||||||||||||| ||||||| ||| | |||||||||||    
T  42515787 gtgttggtttgtggggtcagtcggcaatcttgaaactgggatgttacat 42515835  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 20053983 - 20053955
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatc 45  Q
    |||||||||||||||||||||||||||||    
T  20053983 gtgttggtttgtggggtcagtcgacaatc 20053955  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 46693638 - 46693610
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatc 45  Q
    |||||||||||||||||||||||||||||    
T  46693638 gtgttggtttgtggggtcagtcgacaatc 46693610  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 50002610 - 50002582
Alignment:
Q  17 gtgttggtttgtggggtcagtcgacaatc 45  Q
    |||||||||||||||||||||||||||||    
T  50002610 gtgttggtttgtggggtcagtcgacaatc 50002582  T

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