View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4155_low_14 (Length: 332)
Name: NF4155_low_14
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4155_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 3067255 - 3067571
Alignment:
| Q |
7 |
ggatttacttgcacagtatgatgtaaaagattcaattttcattttgaagttggcatctgnnnnnnnttagagaataaataactattaattatttatatag |
106 |
Q |
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| T |
3067255 |
ggatttacttgcacagtatgatgtaaaagattcaattttcattttgaagttggcatctgaaaaaaattagagaataaataactattaattatttatatag |
3067354 |
T |
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| Q |
107 |
tcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccagaatataaacaaataataatacatgcagtcttccatacaa |
206 |
Q |
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| T |
3067355 |
tcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccagaatataaacaaataataatacatgcagtcttccatacaa |
3067454 |
T |
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| Q |
207 |
gctagaatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaataagtgccattcaaaatcttagagtagtacagatcctttg |
306 |
Q |
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| T |
3067455 |
gctataatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaataagtgccattcaaaatcttagagtagtacagatcctttg |
3067554 |
T |
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| Q |
307 |
tttcacttagttcatct |
323 |
Q |
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| T |
3067555 |
tttcacttagttcatct |
3067571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 3069465 - 3069517
Alignment:
| Q |
7 |
ggatttacttgcacagtatgatgtaaaagattcaattttcattttgaagttggc |
60 |
Q |
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| T |
3069465 |
ggatttacttgcacag-atgatgtaaaagattcaattttcattttgaaattggc |
3069517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 3052619 - 3052679
Alignment:
| Q |
73 |
ttagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaa |
135 |
Q |
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| T |
3052619 |
ttagagaataaataactattc--tatttatatagtcaagttgttgatatcatatgaaattgaa |
3052679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 6769879 - 6769824
Alignment:
| Q |
73 |
ttagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaa |
130 |
Q |
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| T |
6769879 |
ttagagaataaataactattaatta--tatagagtgaagttgttgataacatatgaaa |
6769824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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