View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4155_low_16 (Length: 303)
Name: NF4155_low_16
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4155_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 86 - 284
Target Start/End: Original strand, 37002526 - 37002724
Alignment:
| Q |
86 |
cttagatattcttatagctaatatttagcttcccaacatatattctttaaacttaccaagttttaatcctttaggaaaaccataacttaatcacacaatt |
185 |
Q |
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| T |
37002526 |
cttagattttcttatatctaatatttagcttgccaacatatattcttaaaacttac-aagttgaaatccattaggaaaatcataacttaatcacacaatt |
37002624 |
T |
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| Q |
186 |
tgtcattttct-ggtcccatgactacatacttataaacttcatcacaattacactacacaagttcactaggatcaataaaattagtatgagatcaaggat |
284 |
Q |
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| T |
37002625 |
cgtcattttctaggtcccatgactacatacttataaacttcatctgaataacactgcacaagttcactaggatcaataaaattagtaagagctcaaggat |
37002724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 85 - 284
Target Start/End: Original strand, 36992609 - 36992801
Alignment:
| Q |
85 |
ccttagatattcttatagctaatatttagcttcccaacatatattctttaaacttaccaagttttaatcctttaggaaaaccataacttaatcacacaat |
184 |
Q |
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| T |
36992609 |
ccttagattttcttatatctaatatttagcttgccaacatatatcctttaaactta-caagttttaatcctttaggaaaatcatagcttaatcacacaat |
36992707 |
T |
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| Q |
185 |
ttgtcattttctggtcccatgactacatacttataaacttcatcacaat--tacactacacaagttcactaggatcaataaaattagtatgagatcaagg |
282 |
Q |
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| T |
36992708 |
tcatcatttt-------tatg-ctacatacttataaacttcatcacaattatacactacacaagttcactaggatcaataaaattagtatgagatcaagg |
36992799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 37002459 - 37002510
Alignment:
| Q |
24 |
tgataaattcccttatgttttactcttccatgtacatcatggtatgcacata |
75 |
Q |
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| T |
37002459 |
tgataaattcccttctgttttactctgacatgtacatcatgatatgcacata |
37002510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 26647559 - 26647615
Alignment:
| Q |
20 |
atactgataaattcccttatgttttactcttccatgtacatcatggtatgcacatac |
76 |
Q |
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| T |
26647559 |
atactgataaattcccttatgttttactcttccatgtacatcatggtatgcacatac |
26647615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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