View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4155_low_18 (Length: 273)
Name: NF4155_low_18
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4155_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 37083335 - 37083578
Alignment:
| Q |
14 |
gaagaagaacgaatcggcgtggttaattattggctaaaaaaccatccacacaaggataaagcgaatgcagcatttttcaaaggtggaagtgattttgaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37083335 |
gaagaagaacgaatcggcgtggttaattattggctaaaaaaccatccacacaaggataaagcgaatgcagcatttttcaaaggtggaagtgattttgaag |
37083434 |
T |
|
| Q |
114 |
aatcgcgtacgaacgtggtagtgaaaaattccaaagaaagatcggcaaagtggcatgttaaagatcaaacaaccagcacagtagagtcagtaagttcaac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37083435 |
aatcgcgtacgaacgtggtagtgaaaaattccaaagaaagatcggcaaagtggcatgttaaagatcaaacaaccagcacagtagagtcagtaagttcaac |
37083534 |
T |
|
| Q |
214 |
tacactagtattttgtaaccttattgatatttgacattaagaat |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37083535 |
tacactagtattttgtaaccttattgatatttgacattaagaat |
37083578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 11002665 - 11002454
Alignment:
| Q |
14 |
gaagaagaacgaatcggcgtggttaattattggctaaaaaaccatccacacaaggataaagcgaatgcagcatttttcaaaggtggaagtgattttgaag |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11002665 |
gaagaagaacgaattggcgtggttaattattggctaaaaaaccatccacacaaggataaagtgaatgcagcatttttcaacggtggaagtgattttgaag |
11002566 |
T |
|
| Q |
114 |
aatc---gcgtacgaacgtggtagtgaaaaattccaaagaaagatcggcaaagtggcatgttaaagatcaaacaaccagcacagtagagtcagtaagttc |
210 |
Q |
| |
|
|||| ||| ||| ||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||| | |||||||||||||||| |
|
|
| T |
11002565 |
aatcacgtcgtcagaaagtggtagtgaaaaatcccaaagaaagaatggcaaagtggcctgttaacgatcaaacaaccagcagactagagtcagtaagttc |
11002466 |
T |
|
| Q |
211 |
aactacactagt |
222 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
11002465 |
aactgcactagt |
11002454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University