View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4155_low_2 (Length: 687)

Name: NF4155_low_2
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4155_low_2
NF4155_low_2
[»] chr1 (3 HSPs)
chr1 (1-439)||(1718331-1718768)
chr1 (437-676)||(1718061-1718300)
chr1 (573-619)||(38483819-38483865)
[»] chr5 (5 HSPs)
chr5 (3-378)||(26353408-26353786)
chr5 (566-650)||(26354094-26354178)
chr5 (101-378)||(9816296-9816573)
chr5 (573-643)||(9815908-9815978)
chr5 (574-624)||(27472660-27472710)
[»] chr3 (23 HSPs)
chr3 (115-348)||(20006865-20007089)
chr3 (103-326)||(26648411-26648634)
chr3 (103-279)||(26654458-26654634)
chr3 (566-670)||(26647851-26647955)
chr3 (569-664)||(26654001-26654096)
chr3 (566-640)||(20033501-20033575)
chr3 (567-643)||(19951998-19952074)
chr3 (129-378)||(20014808-20015057)
chr3 (114-238)||(20033036-20033160)
chr3 (573-664)||(20015375-20015466)
chr3 (574-676)||(20007447-20007549)
chr3 (115-348)||(17115339-17115565)
chr3 (588-642)||(19849871-19849925)
chr3 (566-624)||(20006421-20006479)
chr3 (140-284)||(19952483-19952627)
chr3 (111-238)||(20032897-20033022)
chr3 (566-643)||(20035770-20035847)
chr3 (3-82)||(20047353-20047433)
chr3 (437-564)||(26648113-26648243)
chr3 (574-643)||(19813157-19813226)
chr3 (566-630)||(19956971-19957035)
chr3 (196-260)||(19990584-19990648)
chr3 (439-495)||(19952284-19952340)
[»] chr8 (1 HSPs)
chr8 (566-640)||(22685507-22685581)
[»] chr7 (2 HSPs)
chr7 (578-642)||(12582137-12582201)
chr7 (578-642)||(12521888-12521952)
[»] scaffold0038 (1 HSPs)
scaffold0038 (575-614)||(19562-19601)
[»] chr6 (1 HSPs)
chr6 (575-614)||(28219064-28219103)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 1718768 - 1718331
Alignment:
Q  1 tctccttcatttgttatcaacaaaatgaagagtataaaagagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaaannnnnnnnaaggaagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  1718768 tctccttcatttgttatcaacaaaatgaagagtataaaagagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaaaatttttt-aaggaagaa 1718670  T
Q  101 acgatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1718669 acgatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaacatctcttcctg 1718570  T
Q  201 ttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1718569 ttgtcttgccagacgtgcgagctcctcttgattcttcatgcattcctcttttaacaaaaccataacttcatcatctcttgcttccctttctttttcttca 1718470  T
Q  301 gctgtttctttagcgtctgcttgagcagccatatccgagtgaaactgagaatattgctgcgcagcagttacattgttgttcggagcaacnnnnnnnctga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  1718469 gctgtttctttagcgtctgcttgagcagccatatccgagtgaaactgagaatattgctgcgcagcagttacattgttgttcggagtaactttttttctga 1718370  T
Q  401 tagaaaagtttttgcatcttgcttcttctctcccatttg 439  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1718369 tagaaaagtttttgcatcttgcttcttctctcccatttg 1718331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 437 - 676
Target Start/End: Complemental strand, 1718300 - 1718061
Alignment:
Q  437 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataaccagctaaagatgacgaacattggttatttaaatgcttaga 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1718300 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatcttttcataaccagctaaagatgacgaacattggttatttaaatgcttaga 1718201  T
Q  537 ttcatggattatgccaccacatttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagctttt 636  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718200 ttcatggattatgccaccacacttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagctttt 1718101  T
Q  637 cctacatcagctctaggtttcgttgaacatgcacgtctct 676  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  1718100 cctacatcagctctaggtttcgttgaacatgcacatctct 1718061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 619
Target Start/End: Complemental strand, 38483865 - 38483819
Alignment:
Q  573 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattac 619  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||    
T  38483865 gtcaacaagatctggaggaaattcaggtggaacaccaacatcattac 38483819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 3 - 378
Target Start/End: Original strand, 26353408 - 26353786
Alignment:
Q  3 tccttcatttgttatcaacaaaatgaagagtat-aaaagagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaaannnnnnnna-aggaagaa 100  Q
    ||||||| ||||| |||||| ||| |||||||| |||||||||||| |||| |||||||||| |||  || |||||||||||          | ||||||    
T  26353408 tccttcaattgttttcaacacaatcaagagtatgaaaagagcatcactgtcgtgagtttcatgaagggaattcaaaaacaaaataaagttttaagaagaa 26353507  T
Q  101 -acgatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcct 199  Q
     | |||| ||| ||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||  | || | ||||| ||||| ||||||||||    
T  26353508 gatgatggtggttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaatcgtaacatctcttcct 26353607  T
Q  200 gttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttc 299  Q
    ||||||||||||||||   ||| |||||||||| ||||| | ||| | |||||||| |||||| || ||||| ||| ||| |||  ||||||| | ||||    
T  26353608 gttgtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaaccaaaccacaagttcatgatcactttcttttcttccttgtccttc 26353707  T
Q  300 agctgtttctttagcgtctgcttgagcagccatatccgagtgaaactgagaatattgctgcgcagcagttacattgttg 378  Q
    | | ||||||||||| |||||||||||||  ||||||| |  |||||||  || ||||| || | ||||||||||||||    
T  26353708 aaccgtttctttagcttctgcttgagcagaaatatccgggaaaaactgaagatcttgctccgtaacagttacattgttg 26353786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 566 - 650
Target Start/End: Original strand, 26354094 - 26354178
Alignment:
Q  566 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctct 650  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||||| |||| ||||||    
T  26354094 taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctct 26354178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 101 - 378
Target Start/End: Complemental strand, 9816573 - 9816296
Alignment:
Q  101 acgatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctg 200  Q
    |||||| ||| ||||||||| | | || ||||||||| || |||||||||||||||||| ||||||||  |||| | |||||| | || |||||||| ||    
T  9816573 acgatggtggttgttgattcttgagaaaactagtgagaagatgcctcaactcttcatccctcttctccttcaaatctattaactgaaacatctcttcttg 9816474  T
Q  201 ttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttca 300  Q
    ||||||||||| |||    || |||| ||||| ||||| |  || | |||||||| |||||| ||| |||| ||| ||| |||  |||||||||||||||    
T  9816473 ttgtcttgccaaacgcctaagttccttttgatccttcaagtgttgctcttttaaccaaaccagaacatcatgatcactttcttttcttcctttttcttca 9816374  T
Q  301 gctgtttctttagcgtctgcttgagcagccatatccgagtgaaactgagaatattgctgcgcagcagttacattgttg 378  Q
     |   ||||| ||| ||||| |||||||  ||||| ||| ||||||||  || ||||| | |  ||||||||||||||    
T  9816373 accacttcttcagcttctgcgtgagcagaaatatcagagcgaaactgaagatcttgctccacgacagttacattgttg 9816296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 573 - 643
Target Start/End: Complemental strand, 9815978 - 9815908
Alignment:
Q  573 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 643  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| |||| ||| |  |||||||||||    
T  9815978 gtcaacaagattgggaggaaattcaggtggaaaaccaacatcattacaacttctgtcaatttttcctacat 9815908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 624
Target Start/End: Complemental strand, 27472710 - 27472660
Alignment:
Q  574 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccactt 624  Q
    ||||||| ||||  ||| |||||| ||||||||||||||||||||||||||    
T  27472710 tcaacaacattgaaagggaatccaagtggaacaccaacatcattaccactt 27472660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 6e-36; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 115 - 348
Target Start/End: Original strand, 20006865 - 20007089
Alignment:
Q  115 tgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagac 214  Q
    |||||||| | ||||||||| || || || ||||||||||||||| |||||||||||||| |||||| |  ||| ||||| || |||||||||||||||     
T  20006865 tgattccttagaacactagtaaggaggtgtctcaactcttcatccctcttctcccacaaagccattacctctaacatctcctcttgttgtcttgccagat 20006964  T
Q  215 gtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagc 314  Q
    | | ||| |||||||||||||||| | ||| | |||||||||||||||||| || ||         ||||  || ||||||||||| | |||||||||||    
T  20006965 gcgtgagttcctcttgattcttcaagtattgctcttttaacaaaaccataagtttat---------cttcattttctttttcttcaaccgtttctttagc 20007055  T
Q  315 gtctgcttgagcagccatatccgagtgaaactga 348  Q
     |||||||||||||||||||| ||||||||||||    
T  20007056 ttctgcttgagcagccatatcagagtgaaactga 20007089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 103 - 326
Target Start/End: Complemental strand, 26648634 - 26648411
Alignment:
Q  103 gatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgtt 202  Q
    |||| ||| ||||||||| | | |||||||||||| ||||||||||||||||||||| ||||||||  |||| | |||||| | || |||| ||| ||||    
T  26648634 gatggtggttgttgattctttagaacactagtgaggagttgcctcaactcttcatccctcttctccttcaaatctattaactgaaacatcttttcttgtt 26648535  T
Q  203 gtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagc 302  Q
    |||||||||| ||   ||| |||||||| ||||||| | ||  | ||||||||||||||| |||||||| ||| ||| ||| |||||||||||||||| |    
T  26648534 gtcttgccaggcgcctgagttcctcttggttcttcaagtatagctcttttaacaaaaccacaacttcatgatcactttctttccttcctttttcttcaac 26648435  T
Q  303 tgtttctttagcgtctgcttgagc 326  Q
     | ||||||||| | |||||||||    
T  26648434 cgcttctttagcttgtgcttgagc 26648411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 103 - 279
Target Start/End: Complemental strand, 26654634 - 26654458
Alignment:
Q  103 gatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgtt 202  Q
    |||| ||| ||||||||||| | |||||||||||| ||||||||||||||||||||  | ||||||| |||| ||||||| ||||| |||||||| ||||    
T  26654634 gatggtggttgttgattccttagaacactagtgagaagttgcctcaactcttcatctcttttctccctcaaatccattaaacgtaacatctcttcttgtt 26654535  T
Q  203 gtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctctt 279  Q
    ||||||| |||||||| |  |||||||||||||||| ||  | | |||| || |||| || ||||||||||||||||    
T  26654534 gtcttgctagacgtgccatttcctcttgattcttcaagctatgctctttcaataaaatcacaacttcatcatctctt 26654458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 566 - 670
Target Start/End: Complemental strand, 26647955 - 26647851
Alignment:
Q  566 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaaca 665  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||  | ||||| ||||| ||||||     
T  26647955 taagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcattaccacttatgttatcttttcctacacaaactctatgtttccttgaact 26647856  T
Q  666 tgcac 670  Q
    |||||    
T  26647855 tgcac 26647851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 569 - 664
Target Start/End: Complemental strand, 26654096 - 26654001
Alignment:
Q  569 gagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 664  Q
    ||||||||||||||||||||||||||||||||||||||| || |||   |||||||||| ||||||| ||||||| ||||||||||||| ||||||    
T  26654096 gagtgtcaacaagattgggaggaaatccaggtggaacactaaaatcgacaccacttttgctagctttccctacatgagctctaggtttccttgaac 26654001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 566 - 640
Target Start/End: Original strand, 20033501 - 20033575
Alignment:
Q  566 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttccta 640  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||| |||||||    
T  20033501 taagagtgtcaacaagattgggaggaaatccaggtgcaacaccatcatcattactactttcgttagcatttccta 20033575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 567 - 643
Target Start/End: Complemental strand, 19952074 - 19951998
Alignment:
Q  567 aagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 643  Q
    |||||| ||||||  ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  19952074 aagagtttcaacacaattggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctacat 19951998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 129 - 378
Target Start/End: Original strand, 20014808 - 20015057
Alignment:
Q  129 actagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctct 228  Q
    ||||||||| ||||| ||||||||||||||| |||||  |  |||| |||||| |||||| ||||| || ||||||||||||||| |   ||| ||||||    
T  20014808 actagtgagaagttgtctcaactcttcatccctcttcatcttcaaatccattagccgtaacatctcatcttgttgtcttgccagaagcctgagttcctct 20014907  T
Q  229 tgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagcag 328  Q
    |||||||||| | ||| | ||||||| ||||||| | |||||| ||| ||| |||  |||| |||| ||||| ||  ||||||||  | |||||||| ||    
T  20014908 tgattcttcaagtattgctcttttaagaaaaccaaagcttcatgatcactttcttttcttctttttacttcaacttcttctttagattgtgcttgagtag 20015007  T
Q  329 ccatatccgagtgaaactgagaatattgctgcgcagcagttacattgttg 378  Q
      ||| |  |||||||||||  || || ||||||| |||  |||||||||    
T  20015008 aaataccatagtgaaactgaagatttttctgcgcaacagccacattgttg 20015057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 20033036 - 20033160
Alignment:
Q  114 ttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccaga 213  Q
    ||||||||| |  |||||||| || ||||||||||||||||||||  ||||||||| |||| ||| |||||| || |||||||||||||| | | | | |    
T  20033036 ttgattccttaggacactagtaaggagttgcctcaactcttcatctctcttctccctcaaagccaataaccgcaagatctcttcctgttggcgtactaca 20033135  T
Q  214 cgtgcgagctcctcttgattcttca 238  Q
    |||||||| ||| ||||||||||||    
T  20033136 cgtgcgagttccccttgattcttca 20033160  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 573 - 664
Target Start/End: Original strand, 20015375 - 20015466
Alignment:
Q  573 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 664  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||  ||| |||||| |||||||| || || |||| ||||| ||||||    
T  20015375 gtcaacaagattgggacaaaatccaggtggaacaccaacatcattactgcttctgttagtttttcctagatgaggtctatgtttccttgaac 20015466  T

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Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 574 - 676
Target Start/End: Original strand, 20007447 - 20007549
Alignment:
Q  574 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaacatgcacgtc 673  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||| |||||| || |||||||| || |||| || || |||||  ||||| ||    
T  20007447 tcaacaagattgggaggaaatccaggtggaacaccaacatcaatccaacttctgttagattgtcctacatgagatctatgtctccttgaaattgcacttc 20007546  T
Q  674 tct 676  Q
    |||    
T  20007547 tct 20007549  T

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Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 115 - 348
Target Start/End: Complemental strand, 17115565 - 17115339
Alignment:
Q  115 tgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagac 214  Q
    |||||||| | |||||||||||| |||||| |    |||||| || |||||||   |||| |||||||| | || ||| |||| ||||||||||||||||    
T  17115565 tgattccttagaacactagtgaggagttgcat----tcttcacccctcttctctttcaaagccattaactgaaacatcacttcatgttgtcttgccagac 17115470  T
Q  215 gtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagc 314  Q
    |   ||| || ||||||||||||| | ||| | |||||| || ||||| |  ||||| ||| ||| ||   ||||||||  ||||| |||||||  ||||    
T  17115469 gcctgagttcgtcttgattcttcaagtattgctcttttagcagaaccacattttcatgatcactttct---cttcctttcccttcaactgtttccatagc 17115373  T
Q  315 gtctgcttgagcagccatatccgagtgaaactga 348  Q
     ||||||| |||||||||||| ||||||||||||    
T  17115372 ttctgctttagcagccatatcggagtgaaactga 17115339  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 588 - 642
Target Start/End: Complemental strand, 19849925 - 19849871
Alignment:
Q  588 aggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 642  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  19849925 aggaaatccaagtggaaaaccaacatcattaccacttctgttagcttttcctaca 19849871  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 566 - 624
Target Start/End: Original strand, 20006421 - 20006479
Alignment:
Q  566 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccactt 624  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  20006421 taagagtgccaacaagattgggaggaaatccatctggaacaccaacatcaataccactt 20006479  T

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Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 140 - 284
Target Start/End: Complemental strand, 19952627 - 19952483
Alignment:
Q  140 gttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcat 239  Q
    ||||||||||||||||||| ||||| |||| |||| ||||||||||||| ||||| ||||| |||||| |||  || || || || |||||| ||||||     
T  19952627 gttgcctcaactcttcatctttcttttccctcaaagccattaaccgtaagatctcctcctgctgtcttcccaagcgcgctagttcttcttgaatcttcaa 19952528  T
Q  240 gcattccacttttaacaaaaccataacttcatcatctcttgcttc 284  Q
    | |||   ||||| |||||||||  ||||||| ||| ||| ||||    
T  19952527 gtattggtcttttgacaaaaccacgacttcatgatccctttcttc 19952483  T

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Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 20032897 - 20033022
Alignment:
Q  111 ctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgcc 210  Q
    |||||||||||| | ||||||||  || | ||||||||||||||||||| ||||||||| ||||  || ||| || || ||||||||||||||||||||     
T  20032897 ctgttgattccttagaacactag--aggatttgcctcaactcttcatccctcttctccctcaaagacaataatcgcaagatctcttcctgttgtcttgct 20032994  T
Q  211 agacgtgcgagctcctcttgattcttca 238  Q
    | | |   ||| ||||||||||||||||    
T  20032995 acatgcttgagttcctcttgattcttca 20033022  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 566 - 643
Target Start/End: Original strand, 20035770 - 20035847
Alignment:
Q  566 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 643  Q
    ||||||| |||||||||||||||| |||||||||  |||||| ||| ||| |||||||||||||   |||||||||||    
T  20035770 taagagtatcaacaagattgggagaaaatccaggctgaacacaaacttcaataccacttttgtttaattttcctacat 20035847  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 20047433 - 20047353
Alignment:
Q  3 tccttcatttgttatcaacaaaatgaagagtat-aaaagagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaa 82  Q
    ||||||||||||||||||||||||  ||||||| ||||||| |||| |||||| ||||| || || |||| ||||||||||    
T  20047433 tccttcatttgttatcaacaaaatagagagtatgaaaagagaatcactgtcataagtttgatgaacaaaattcaaaaacaa 20047353  T

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Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 437 - 564
Target Start/End: Complemental strand, 26648243 - 26648113
Alignment:
Q  437 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataaccagctaaagatgacgaaca---ttggttatttaaatgctt 533  Q
    |||||||||| |||||||||  ||||| || ||| ||||||||||||||||||| ||||   ||| |||| |  |||||   |||||    |||||||||    
T  26648243 ttgaaagttcaatgttatctactgaaactggccttttcagtggtaatatcttttcataatatgctgaagaggctgaacaactttggtccaataaatgctt 26648144  T
Q  534 agattcatggattatgccaccacatttgtac 564  Q
    ||||||||||||| |||||||||| ||||||    
T  26648143 agattcatggattttgccaccacacttgtac 26648113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 643
Target Start/End: Complemental strand, 19813226 - 19813157
Alignment:
Q  574 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 643  Q
    ||||||||||||||||||||| ||||||||||| || || || |||||||| ||| |  |||||||||||    
T  19813226 tcaacaagattgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacat 19813157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 630
Target Start/End: Complemental strand, 19957035 - 19956971
Alignment:
Q  566 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgtta 630  Q
    ||||||| |||||||||||||||| |||||||||| |||||| ||| ||  |||||||| |||||    
T  19957035 taagagtatcaacaagattgggagaaaatccaggttgaacacaaacctccataccacttctgtta 19956971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 19990648 - 19990584
Alignment:
Q  196 tcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaac 260  Q
    ||||||| |||||||||||||| ||| |||||||||||||||| | ||| | ||||||| |||||    
T  19990648 tcctgttctcttgccagacgtgtgagttcctcttgattcttcaagtatttctcttttaagaaaac 19990584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 439 - 495
Target Start/End: Complemental strand, 19952340 - 19952284
Alignment:
Q  439 gaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataa 495  Q
    |||||||| ||| ||||||| |||| || ||| ||||||||||||||||||| ||||    
T  19952340 gaaagttcaatgctatctttcgaaactggccttttcagtggtaatatcttttcataa 19952284  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 566 - 640
Target Start/End: Original strand, 22685507 - 22685581
Alignment:
Q  566 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttccta 640  Q
    |||| |||| ||||||||||  || |||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  22685507 taagtgtgttaacaagattgaaagaaaatccaggtggaacaccaacatcattaccacttctgttagctattccta 22685581  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 642
Target Start/End: Complemental strand, 12582201 - 12582137
Alignment:
Q  578 caagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 642  Q
    ||||||||||| |||||| |||  || ||||||||| | |||| |||||||||||||||||||||    
T  12582201 caagattgggacgaaatctaggctgaccaccaacatgaataccgcttttgttagcttttcctaca 12582137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 642
Target Start/End: Complemental strand, 12521952 - 12521888
Alignment:
Q  578 caagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 642  Q
    |||||||| || |||||| |||  || ||||||||| | |||| |||||||||||||||||||||    
T  12521952 caagattgagacgaaatctaggctgaccaccaacatgaataccgcttttgttagcttttcctaca 12521888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 614
Target Start/End: Original strand, 19562 - 19601
Alignment:
Q  575 caacaagattgggaggaaatccaggtggaacaccaacatc 614  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  19562 caacaagaatgggaggaaatccaggtagaacaccaacatc 19601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 614
Target Start/End: Original strand, 28219064 - 28219103
Alignment:
Q  575 caacaagattgggaggaaatccaggtggaacaccaacatc 614  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  28219064 caacaagaatgggaggaaatccaggtagaacaccaacatc 28219103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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