View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4155_low_3 (Length: 615)
Name: NF4155_low_3
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4155_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Complemental strand, 27747938 - 27747334
Alignment:
| Q |
1 |
cttgagtgttaaacacacacacatgatttgttatacatgtgcatacaagataaaccattgatgttttcatcaatgatgatagatatagaaaagccgaacc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27747938 |
cttgagtgttaaacacacacacatgatttgttatacatgtgcatacaagataaaccattgatgttttcatcaatgatgatagatatagaaaagccgaacc |
27747839 |
T |
|
| Q |
101 |
gaatatgtgttgaacgataaaaagtaaacataactgccatatttaattactcctgtccactattgagtaaattgttggcagctacttgtaatagcttaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27747838 |
gaatatgtgttgaacgataaaaagtaaacataactgccatatttaattactcctgtccactattgagtaaattgttggcagctgcttgtaatagcttaaa |
27747739 |
T |
|
| Q |
201 |
tagaagcaacaatacaatgtttatagaacacaaaaaataccttttaaattgtggatcggtgggatcaatagcatagtcaggagaagagaaaaaatgtgca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27747738 |
tagaagcaacaatacaatgtttatagaacacaaaaaataccttttaaattgtggatcggtgggatcaatagcatagtcaggagaagagaaaaaatgtgca |
27747639 |
T |
|
| Q |
301 |
aaacgtggatcatcactatatgtactgtttggaactttaccctcatcaataataacattctcctttcccattttgtccttccnnnnnnnaaattttagac |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
27747638 |
aaacgtggatcatcactatatgtactgtttggaactttaccctcatcaataataacattctcctttcccattttgtccttcctttttttaaattttagac |
27747539 |
T |
|
| Q |
401 |
tatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctcttctttgcttgctttgtcaacagcaactatatccatatgatt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27747538 |
tatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctcttctttgcttgctttgtcaacagcaactatatccatatgatt |
27747439 |
T |
|
| Q |
501 |
gtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaatgaactcatttgctgctttaataacttgttgatcactatcatcatct |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
27747438 |
gtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaatgaactcatttgctgcttcaataacttgttgatcactatcatcatct |
27747339 |
T |
|
| Q |
601 |
gatga |
605 |
Q |
| |
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||||| |
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|
| T |
27747338 |
gatga |
27747334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 234 - 474
Target Start/End: Original strand, 38527224 - 38527452
Alignment:
| Q |
234 |
aaaataccttttaaattgtggatcggtgggatcaatagcatagtcag--gagaagagaaaaaatgtgcaaaacgtggatcatcactatatgtactgtttg |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | | ||||||||||||||||||| ||| | |||||| |
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|
| T |
38527224 |
aaaataccttttaaattgtggatcggtgggatcaatagcaaagtcagctgagaagataga-----tgcaaaacgtggatcatcaa---atgcattgtttg |
38527315 |
T |
|
| Q |
332 |
gaactttaccctcatcaataataacattctcctttcccattttgtccttccnnnnnnnaaattttagactatatcctttgagaccagtttctgtcgcctt |
431 |
Q |
| |
|
| | ||| |||||||||||| |||||||| || ||||| |||| | ||| || ||| ||||||| ||||||||||| ||||| |||| |
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|
| T |
38527316 |
gtattttcccctcatcaatag---cattctccg---cctttttgcccttgccttttttaaacttcagattatatcccttgagaccagtacctgtcccctt |
38527409 |
T |
|
| Q |
432 |
gtcatcagcaagcaataactcaagctcttctttgcttgctttg |
474 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
38527410 |
gtcatcagcaagcaacagttcaagctcttctttgcttgctttg |
38527452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 5e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 174 - 457
Target Start/End: Complemental strand, 49518394 - 49518111
Alignment:
| Q |
174 |
gttggcagctacttgtaatagcttaaatagaagcaacaatacaatgtttatagaacacaaaaaataccttttaaattgtggatcggtgggatcaatagca |
273 |
Q |
| |
|
|||||||||| |||||||| ||| ||||| |||||| ||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
49518394 |
gttggcagctgtttgtaataactttaatagtagcaactatacactgtttataaaacacagaaaataccttttatattgtggatcggtgggatcaatagca |
49518295 |
T |
|
| Q |
274 |
tagtcaggagaagagaaaaaatgtgcaa---aacgtggatcatcactatatgtactgtttggaactttaccctcatcaataataacattctcctttccca |
370 |
Q |
| |
|
||||||||||| ||||| | |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
49518294 |
tagtcaggaga---gaaaagaagtgcaacaaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttcccca |
49518198 |
T |
|
| Q |
371 |
ttttgtccttccnnnnnnnaaattttagactatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagct |
457 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||||||||| || |||||||||||| |||||||| ||||||| |
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|
| T |
49518197 |
ttttgtccttcctttttttaaattttagattatatcccttgagaccagtttctatccccttgtcatcaggaagcaatagttcaagct |
49518111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 499 - 605
Target Start/End: Complemental strand, 49518065 - 49517956
Alignment:
| Q |
499 |
ttgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaat---gaactcatttgctgctttaataacttgttgatcactatcat |
595 |
Q |
| |
|
|||||| |||||||| ||| || ||||||||||||||||||| |||||||||||| |||||||| |||| ||| | || |||||||||||||||||| |
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| T |
49518065 |
ttgtcatttttactcatttgtgctttcttcctcttcttaacacaaggttcctcaatgaggaactcatctgcttcttcattagcttgttgatcactatcat |
49517966 |
T |
|
| Q |
596 |
catctgatga |
605 |
Q |
| |
|
|||||||||| |
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|
| T |
49517965 |
catctgatga |
49517956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 49518571 - 49518513
Alignment:
| Q |
17 |
acacacatgatttgttatacatgtgcatacaagataaaccattgatgttttcatcaatg |
75 |
Q |
| |
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|||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
49518571 |
acactcatgatttattatacatgtgctaacaagataaaccattgatgttttcatcaatg |
49518513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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