View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4155_low_4 (Length: 572)
Name: NF4155_low_4
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4155_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 20 - 555
Target Start/End: Original strand, 55171842 - 55172377
Alignment:
| Q |
20 |
ttgggtccggcgtacctatgctccatataagctccactgtcctgtattgtttggtgtacaaaaaacattagttgttgtatgttttgtcctcactcactca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55171842 |
ttgggtccggcgtacctatgctccatataagctccactgtcctgtattgtttggtgtacaaaaaacattagttgttgtatgttttgtcctcactcactca |
55171941 |
T |
|
| Q |
120 |
tgattaatgtttggttggatcatgaagagtcttacaggtagtccaacagtggtagccaagatggaaatgtagttggttccaaccttgaagttagctggtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55171942 |
tgattaatgtttggttggatcatgaagagtcttacaggtagtccaacagtggtagccaagatggaaatgtagttggttccaaccttgaagttagctggtt |
55172041 |
T |
|
| Q |
220 |
gctcaaattcaaaagatttttcttcatgggtaccatgatcagtacctattacaaatcaaagttagaatcatataaaactcttgccatttcctctcctctc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
55172042 |
gctcaaattcaaaagatttttcttcatgggtaccatgatcagtacctattacaaatcaaagttagaatcatataaaactcttgccatttcctctcctatc |
55172141 |
T |
|
| Q |
320 |
actcaccattgccgtttattattgaaattatgttcttaccaatgtattgtccattaacaaatgcggatagtgtgtgtccaagactcataatacgaagaat |
419 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55172142 |
actcaccattgtcgtttattattgaaattatgttcttaccaatgtattgtccattaacaaatgcggatagtgtgtgtccaagactcataatacgaagaat |
55172241 |
T |
|
| Q |
420 |
tgcactcttctttggcaagtcttctggacccaactcaaagctgcattagaaaaaccataattaatttatgatagatgtggggaatgagttgcatatttca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55172242 |
tgcactcttctttggcaagtcttctggacccaactcaaagctgcattagaaaaaccataaataatttatgatagatgtggggaatgagttgcatatttca |
55172341 |
T |
|
| Q |
520 |
aatttaattaaggttgaatgaatgaatcctcacctg |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
55172342 |
aatttaattaaggttgaatgaatgaatcctcacctg |
55172377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University