View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4155_low_5 (Length: 551)
Name: NF4155_low_5
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4155_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 24 - 522
Target Start/End: Original strand, 3249946 - 3250445
Alignment:
| Q |
24 |
aggattaagtctagcataagagattagtctcgcacaacactgcgaatcaagttatagacagtacaaaaacaagattatctcttgatggagaaaatctacg |
123 |
Q |
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| T |
3249946 |
aggattaagtctagcataagagattagtctcgcacaacactgcgaatcaagttatagacggtacaaaaacacgattatctcttgatggagaaaatctacg |
3250045 |
T |
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| Q |
124 |
aagaaaatgaacacaatgagtgaaaaagaaattctgatttttaaaataacaatgaatgattctccttag-nnnnnnngttaacaataattctcatttgtt |
222 |
Q |
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| T |
3250046 |
aagaaaatgaacacaatgagtgaaaaagaaattctgatttttaaaataacaatgaatgattctccttagaaaaaaaagttaacaataattctcatttgtt |
3250145 |
T |
|
| Q |
223 |
tagttagagtttctaacagatgtaatgagccttttagtccaaatagaaaagacgtaatgtagctaatgcacacaattctaatttttaggaatgtgnnnnn |
322 |
Q |
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| T |
3250146 |
tagttagtgtttctaacagaggtaatgagccttttagtccaaatagaaaagacgtaatgtagctaatgcacacaattctaatttttaggtatgtg--ttt |
3250243 |
T |
|
| Q |
323 |
nnnnnnngagagaattttttaggtatgtgttgttattaaagtttaaatatatgcttgatgtctataaatataacaatgttagttttagtcatgtaagtta |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3250244 |
tttttttgagagaattttttaggtatgtgttgttattaaagtttaaatatatgcttgatgtctataaatataacaatgttagttttagtcatgtaagtta |
3250343 |
T |
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| Q |
423 |
tacttgcgt--nnnnnnnntgtcatgtaagttgttttggatttcatcatacttcaaaagttagaaatgatgatttttagtccttaacatcaacaatcgtt |
520 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3250344 |
tacttgcgtaaaaaaaaaatgtcatgcaagttgttttggatttcatcatacttcaaaagttagaaatgatgatttttagtccttaacatcaacaatcgtt |
3250443 |
T |
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