View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4155_low_6 (Length: 548)
Name: NF4155_low_6
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4155_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 14 - 532
Target Start/End: Original strand, 31063583 - 31064107
Alignment:
| Q |
14 |
catcatcaattgcttgatcaatagcagataatacgtcagcaccaaagcaactagcagcatcggttagagaccaacacactttgtaggttgcaaccctagc |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
31063583 |
catcatcaattgcttgatcaatagcagataatacatcagcaccaaagcaactagcggcatctgttagagaccagcacactttgtaggttgcaactctagc |
31063682 |
T |
|
| Q |
114 |
tcttggtgaacctccttttatggtaccattgccaataccaaatatgcttgcacctggtacgaagtttccaccggctgttgatagtgtatgagtaccgtga |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31063683 |
tcttggtgaacctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaagtttccaccggctgttgatagtgtatgagtaccgtga |
31063782 |
T |
|
| Q |
214 |
cctacaaagtcacgtgctgtacgctgcgatgtgggaagtttgccattatatcgctcataagcatcgctgaaaaatctggctccaattagcttcctgatat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31063783 |
cctacaaagtcacgtgctgtacgctgcgatgtgggaagtttgccattatatcgctcataagcatcgctgaaaaatctggctccaattagcttcctgatat |
31063882 |
T |
|
| Q |
314 |
gtatatgtagtgcagttaatcaacagaaatattgttagagtaacttcctctattgccatcaatgttgtcgcaacaacatcggaccgaccagtttaatcga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
31063883 |
gtatatgtagtgcagttaatcaacagaaatattgttagagtaacttcctctattgccatcaatgttgttgcaacaacatcagaccgaccagtttaatcga |
31063982 |
T |
|
| Q |
414 |
tcatccaatgccgtcaataatctccttttaatatannnnnnnacggacgtttttaatattatttaaacttaatg------ttaaaaagaaaaatagtact |
507 |
Q |
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| T |
31063983 |
tcatccaatgccgtcaataatctccttttaatatatttttttacagacgtttttaatattatttaaacttaatgtgcaatttaaaaagaaaaatagtact |
31064082 |
T |
|
| Q |
508 |
aagcataattgtatagtcaaagaaa |
532 |
Q |
| |
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| T |
31064083 |
aagcataattgtatagtcaaagaaa |
31064107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 31108670 - 31108889
Alignment:
| Q |
14 |
catcatcaattgcttgatcaatagcagataatacgtcagcaccaaagcaactagcagcatcggttagagaccaacacactttgtaggttgcaaccctagc |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
31108670 |
catcatcaattgcttgatcaatagcagataatacatcagcaccaaagcaactagtggcatctgttagagaccagcacactttgtaggttgcaactctagc |
31108769 |
T |
|
| Q |
114 |
tcttggtgaacctccttttatggtaccattgccaataccaaatatgcttgcacctggtacgaagtttccaccggctgttgatagtgtatgagtaccgtga |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| || |
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| T |
31108770 |
tcttggtgaacctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaaatttccaccagctgttgatagtgtgtgagtaccatgg |
31108869 |
T |
|
| Q |
214 |
cctacaaagtcacgtgctgt |
233 |
Q |
| |
|
|| || |||||||| ||||| |
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| T |
31108870 |
ccaacgaagtcacgcgctgt |
31108889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 79 - 309
Target Start/End: Complemental strand, 31201520 - 31201290
Alignment:
| Q |
79 |
agagaccaacacactttgtaggttgcaaccctagctcttggtgaacctccttttatggtaccattgccaataccaaatatgcttgcacctggtacgaagt |
178 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||| |||||| ||||||| |||| |
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|
| T |
31201520 |
agagaccagcacactttgtaggttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagt |
31201421 |
T |
|
| Q |
179 |
ttccaccggctgttgatagtgtatgagtaccgtgacctacaaagtcacgtgctgtacgctgcgatgtgggaagtttgccattatatcgctcataagcatc |
278 |
Q |
| |
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|||| || ||||||||||| |||||||||||||| |||| |||||| ||||| ||||| ||| ||| |||||| ||| |||| ||| ||| ||||||| |
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| T |
31201420 |
ttcccccagctgttgatagagtatgagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagcttgtcattgtatgcctcgtaagcatt |
31201321 |
T |
|
| Q |
279 |
gctgaaaaatctggctccaattagcttcctg |
309 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
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|
| T |
31201320 |
gctgaagaatctggctccaattagcttcctg |
31201290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 31051196 - 31051349
Alignment:
| Q |
80 |
gagaccaacacactttgtaggttgcaaccctagctcttggtgaacctccttttatggtaccattgccaataccaaatatgcttgcacctggtacgaagtt |
179 |
Q |
| |
|
||||||||||||||||||||||| |||| || | | |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31051196 |
gagaccaacacactttgtaggttacaactcttgattttggtgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtt |
31051295 |
T |
|
| Q |
180 |
tccaccggctgttgatagtgtatgagtaccgtgacctacaaagtcacgtgctgt |
233 |
Q |
| |
|
|||||| |||||||||||||| |||||||| || || ||||||||||||||| |
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|
| T |
31051296 |
tccaccagctgttgatagtgtgtgagtaccatggccgtaaaagtcacgtgctgt |
31051349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 31146427 - 31146639
Alignment:
| Q |
21 |
aattgcttgatcaatagcagataatacgtcagcaccaaagcaa-ctagcagcatcggttagagaccaacacactttgtaggttgcaaccctagctcttgg |
119 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||||||||| ||| || |||| |||||||||||||| |||||||||||||||| || | |||||| |
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| T |
31146427 |
aattgcttgatcaatagcagctaatacatcggcaccaaagcagtcta-caacatctgttagagaccaacatgctttgtaggttgcaactcttgatcttgg |
31146525 |
T |
|
| Q |
120 |
tgaacctccttttatggtaccattgccaataccaaatatgcttgcacctggtacgaagtttccaccggctgttgatagtgtatgagtaccgtgacctaca |
219 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| |||| | |||||||||||||||| |||||||||||||| || || || || |||||| |
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|
| T |
31146526 |
tgaaccaccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatggcctaca |
31146625 |
T |
|
| Q |
220 |
aagtcacgtgctgt |
233 |
Q |
| |
|
||||| || ||||| |
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|
| T |
31146626 |
aagtctcgcgctgt |
31146639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 31164253 - 31164465
Alignment:
| Q |
21 |
aattgcttgatcaatagcagataatacgtcagcaccaaagcaa-ctagcagcatcggttagagaccaacacactttgtaggttgcaaccctagctcttgg |
119 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||| ||||| ||| || |||| |||||||||||||| |||||||||||||||| || | |||||| |
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|
| T |
31164253 |
aattgcttgatcaatagcagctaatacatcggcaccgaagcagtcta-caacatctgttagagaccaacatgctttgtaggttgcaactcttgatcttgg |
31164351 |
T |
|
| Q |
120 |
tgaacctccttttatggtaccattgccaataccaaatatgcttgcacctggtacgaagtttccaccggctgttgatagtgtatgagtaccgtgacctaca |
219 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| |||| | |||||||||||||||| |||||||||||||| || || || || |||||| |
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|
| T |
31164352 |
tgaaccaccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatggcctaca |
31164451 |
T |
|
| Q |
220 |
aagtcacgtgctgt |
233 |
Q |
| |
|
||||| || ||||| |
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|
| T |
31164452 |
aagtctcgcgctgt |
31164465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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