View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4155_low_7 (Length: 463)
Name: NF4155_low_7
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4155_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 9 - 445
Target Start/End: Original strand, 50340303 - 50340738
Alignment:
| Q |
9 |
taattctcgagtttcaaggcactcttgccatggaaatacaaaagctggaaattgtggcttcaagttggacgtacgttttttccatcccatcacagaaata |
108 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50340303 |
taattctcgcgttttgaggcactcttgccatggaaatacaaaagctggaaattgtggcttcaagttggacgtacgttttttccatcccatcatagaaata |
50340402 |
T |
|
| Q |
109 |
aacatagccttaaacactttttaaataactcagagttcaatcttctggttaaataaacttttaaaaaagttttgacctcaacaaatttgaacccagttta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50340403 |
aacatagccttaaacactttttaaataactcagagttcaatcttctggttaaataaacttttaaaaaagttttgacctcaacaaatttgaacccagttta |
50340502 |
T |
|
| Q |
209 |
aatttgtccaactttagtattagttctcaagtaattatacaccagtgtaaataacaatctcagtatgttccaaatataaattttgtttaattatttcgta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50340503 |
aatttgtccaactttagtattagttctcaagtaattatacaccagtgtaaataacaatctcagtatgttccaaatataaattttgtttaattatttcgta |
50340602 |
T |
|
| Q |
309 |
actttattgtattggtagaatatatttgaacaattaattagaagacccttaatggagnnnnnnnnncttatatgaaactttaattgaaattcaagaattc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
50340603 |
actttattgtattggtagaatatatttgaacaattaattagaagacccttaatggag-ttttttttcttatatgaaactttaattgaaattcgagaattc |
50340701 |
T |
|
| Q |
409 |
agcccatattttattttatctacatattattatggtt |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50340702 |
agcccatattttattttatctacatattattatggtt |
50340738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University