View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4155_low_9 (Length: 432)
Name: NF4155_low_9
Description: NF4155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4155_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 56 - 417
Target Start/End: Complemental strand, 20772459 - 20772098
Alignment:
| Q |
56 |
gtaaaggttactatacattactcacatacattacatctaatatttatacaatgaatattttatattcgaataacatccatgcagtaaaaagtccaaaatt |
155 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20772459 |
gtaaaggttactatacattactcacgtacattacatctattatttatacaatgaatattttatattcgaataacatccatgcagcaaaaagtccaaaatt |
20772360 |
T |
|
| Q |
156 |
cgttgtcacaactcacatgatcaatctagctatggtatgagcttagaaaaaatagcatatgtgcatgatggcaagcatattttgacaacagatgaggtgg |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
20772359 |
cgttgtcacaactcacatgatcaatctagctatggtatgagcttagaaaaaatagcatatgtgcatgatggcatgcttattttgacaacagatgaggtgg |
20772260 |
T |
|
| Q |
256 |
catatgtcaactatgggaattcatagatgccactcatataatatcttgaaaattgctgtatacacttctaacaaggctgaaacacaccnnnnnnngacgt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||| |
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| T |
20772259 |
catatgtcaactatgggaattcatagatgccactcatataatatcttgaaaatttctgtatacacttttaacaaggttgaaacacaccaaaaaaagacgt |
20772160 |
T |
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| Q |
356 |
aaatgttaatctacagttatctgccgcggttaaaatccatcgacaattaactgccgatctct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20772159 |
aaatgttaatctacagttatctgccgcggttaaaatccatcgacaattaactgccgatctct |
20772098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 42456824 - 42456861
Alignment:
| Q |
300 |
cttgaaaattgctgtatacacttctaacaaggctgaaa |
337 |
Q |
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| T |
42456824 |
cttgaaaattgctgtatacacttctaacaaggctgaaa |
42456861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 27249739 - 27249780
Alignment:
| Q |
302 |
tgaaaattgctgtatacacttctaacaaggctgaaacacacc |
343 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
27249739 |
tgaaaattgttgtatacacttcaaacaaggctgaaacacacc |
27249780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 29923843 - 29923953
Alignment:
| Q |
304 |
aaaattgctgtatacacttctaacaaggctgaaacacaccnnnnnnngacgtaaatgttaatctacagttatctgccgc-ggttaaaatccatcgacaat |
402 |
Q |
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||||||| ||||||||| | | | |||||||||||||| | ||| |||||||| ||| ||||||| ||||||| |||||||||||||| |||| |
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| T |
29923843 |
aaaattgttgtatacacatgtgataaggctgaaacacaacagaaaaagacataaatgtttatcgacagttaactgccgccggttaaaatccatcagcaat |
29923942 |
T |
|
| Q |
403 |
taactgccgat |
413 |
Q |
| |
|
||||||||||| |
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|
| T |
29923943 |
taactgccgat |
29923953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 25271903 - 25271863
Alignment:
| Q |
301 |
ttgaaaattgctgtatacacttctaacaaggctgaaacaca |
341 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||||||||| |
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|
| T |
25271903 |
ttgaaaattgttgtttacacttcaaacaaggctgaaacaca |
25271863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 7682834 - 7682797
Alignment:
| Q |
304 |
aaaattgctgtatacacttctaacaaggctgaaacaca |
341 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |
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| T |
7682834 |
aaaattgctgtttacacttctaataaggctgaaacaca |
7682797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 51381110 - 51381070
Alignment:
| Q |
303 |
gaaaattgctgtatacacttctaacaaggctgaaacacacc |
343 |
Q |
| |
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||||||||| || |||||||| ||||||||||||||||||| |
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| T |
51381110 |
gaaaattgccgtttacacttcaaacaaggctgaaacacacc |
51381070 |
T |
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