View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4156_high_3 (Length: 365)
Name: NF4156_high_3
Description: NF4156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4156_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 6854963 - 6854614
Alignment:
| Q |
1 |
tgtagtatttcctaatgcgaagggaacccttggaggggatgttttctcctattcgatctatttcttaaatcaggtgttctttcttggaaattcaaatcaa |
100 |
Q |
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| T |
6854963 |
tgtagtatttcctaatgtgaagggaacccttggaggggatgttttctcctattcgatctatttcttaaatcaggtgttctttcttggaaattcaaatcaa |
6854864 |
T |
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| Q |
101 |
gcttcctaacatctaccactta---gtcaagagctggcatgtgcttgacaagtaggttttggctgatgaatctctctgagaaagaatatgtcaagctcca |
197 |
Q |
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| T |
6854863 |
gcttcctaacatctaccacttattagtcaagagctggtatgtgcttgacaagtaggttttggctgatgaatctctctgagaaagaatatgtcaagctcca |
6854764 |
T |
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| Q |
198 |
tatgttttgttttggcatgtagaaatggggcgtcggatagaacaacaatgctaacattgttgctgagcagcgctatggctaccatttttgaggtgttgaa |
297 |
Q |
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| T |
6854763 |
tatgttttgttttggcatgtagaa-tggggcgttggatagaacaagaatgctaacattgttgctgagcagcgctatggctaccatttttgaggtgttgaa |
6854665 |
T |
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| Q |
298 |
cctctatagccaaaaaatatgccaaattctaaagttgtttgagcgtaaact |
348 |
Q |
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| T |
6854664 |
cctctatagccaaaaaatatgccaaattctaaagttgtttgagcgtaaact |
6854614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 103 - 266
Target Start/End: Original strand, 6823549 - 6823712
Alignment:
| Q |
103 |
ttcctaacatctaccacttagtcaagagctggcatgtgcttgacaagtaggttttggctgatgaatctctctgagaaagaatatgtcaagctccatatgt |
202 |
Q |
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|||||||| ||||||| || |||||||||||||||||||||||||| || |||| ||||||||| ||||||| || ||||||| |||| |||| |||||| |
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| T |
6823549 |
ttcctaacttctaccagttggtcaagagctggcatgtgcttgacaattatgtttcggctgatgactctctctaagcaagaataggtcaggctctatatgt |
6823648 |
T |
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| Q |
203 |
tttgttttggcatgtagaaatggggcgtcggatagaacaacaatgctaacattgttgctgagca |
266 |
Q |
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| T |
6823649 |
ttggtttcgacatgtagaatggggtcgtaggatagaacaacaatgctaacattgttgcagagca |
6823712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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